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A server that exposes Pathling functionality through a FHIR API.
/*
* Copyright 2023 Commonwealth Scientific and Industrial Research
* Organisation (CSIRO) ABN 41 687 119 230.
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*/
package au.csiro.pathling.aggregate;
import java.util.List;
import java.util.Optional;
import javax.annotation.Nonnull;
import lombok.Getter;
import lombok.Value;
import org.hl7.fhir.r4.model.Parameters;
import org.hl7.fhir.r4.model.Parameters.ParametersParameterComponent;
import org.hl7.fhir.r4.model.StringType;
import org.hl7.fhir.r4.model.Type;
/**
* Represents the information to be provided as the result of the invocation of the "aggregate"
* operation.
*
* @author John Grimes
*/
@Getter
public class AggregateResponse {
@Nonnull
private final List groupings;
/**
* @param groupings A set of grouped results
*/
public AggregateResponse(@Nonnull final List groupings) {
this.groupings = groupings;
}
/**
* Converts this to a {@link Parameters} resource, based on the definition of the result of the
* "aggregate" operation within the OperationDefinition.
*
* @return a new {@link Parameters} object
*/
public Parameters toParameters() {
final Parameters parameters = new Parameters();
groupings.forEach(grouping -> {
final ParametersParameterComponent groupingParameter = new ParametersParameterComponent();
groupingParameter.setName("grouping");
grouping.getLabels()
.forEach(label -> {
final ParametersParameterComponent labelPart = new ParametersParameterComponent();
labelPart.setName("label");
// A "null" value is represented by the absence of a value within FHIR.
label.ifPresent(labelPart::setValue);
groupingParameter.getPart().add(labelPart);
});
grouping.getResults()
.forEach(result -> {
final ParametersParameterComponent resultPart = new ParametersParameterComponent();
resultPart.setName("result");
// A "null" value is represented by the absence of a value within FHIR.
result.ifPresent(resultPart::setValue);
groupingParameter.getPart().add(resultPart);
});
if (grouping.getDrillDown().isPresent()) {
final String drillDown = grouping.getDrillDown().get();
final ParametersParameterComponent drillDownPart = new ParametersParameterComponent();
drillDownPart.setName("drillDown");
drillDownPart.setValue(new StringType(drillDown));
groupingParameter.getPart().add(drillDownPart);
}
parameters.getParameter().add(groupingParameter);
});
return parameters;
}
/**
* Represents a grouped result within an {@link AggregateResponse}.
*/
@Value
public static class Grouping {
@Nonnull
// This is a list of Optionals to account for the fact that we can receive null labels here,
// which is valid when a grouping expression evaluates to an empty collection for some
// resources.
List> labels;
@Nonnull
// This is a list of Optionals to account for the fact that we can receive null results of
// aggregations.
List> results;
@Nonnull
Optional drillDown;
}
}