
au.csiro.pathling.search.SearchProvider Maven / Gradle / Ivy
/*
* Copyright 2023 Commonwealth Scientific and Industrial Research
* Organisation (CSIRO) ABN 41 687 119 230.
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*/
package au.csiro.pathling.search;
import static au.csiro.pathling.fhir.FhirServer.resourceTypeFromClass;
import au.csiro.pathling.config.ServerConfiguration;
import au.csiro.pathling.encoders.FhirEncoders;
import au.csiro.pathling.fhirpath.ResourceDefinition;
import au.csiro.pathling.io.Database;
import au.csiro.pathling.security.OperationAccess;
import au.csiro.pathling.terminology.TerminologyServiceFactory;
import ca.uhn.fhir.context.FhirContext;
import ca.uhn.fhir.rest.annotation.OptionalParam;
import ca.uhn.fhir.rest.annotation.Search;
import ca.uhn.fhir.rest.api.server.IBundleProvider;
import ca.uhn.fhir.rest.param.StringAndListParam;
import ca.uhn.fhir.rest.server.IResourceProvider;
import java.util.Optional;
import javax.annotation.Nonnull;
import javax.annotation.Nullable;
import lombok.extern.slf4j.Slf4j;
import org.apache.spark.sql.SparkSession;
import org.hl7.fhir.instance.model.api.IBaseResource;
import org.hl7.fhir.r4.model.Enumerations.ResourceType;
import org.springframework.context.annotation.Profile;
import org.springframework.context.annotation.Scope;
import org.springframework.stereotype.Component;
/**
* HAPI resource provider that can be instantiated using any resource type to add the FHIRPath
* search functionality.
*
* @author John Grimes
*/
@Component
@Scope("prototype")
@Profile("server")
@Slf4j
public class SearchProvider implements IResourceProvider {
/**
* The name of the FHIR search profile.
*/
private static final String QUERY_NAME = "fhirPath";
/**
* The name of the parameter which is passed to the search profile.
*/
private static final String FILTER_PARAM = "filter";
@Nonnull
private final ServerConfiguration configuration;
@Nonnull
private final FhirContext fhirContext;
@Nonnull
private final SparkSession sparkSession;
@Nonnull
private final Database database;
@Nonnull
private final Optional terminologyServiceFactory;
@Nonnull
private final FhirEncoders fhirEncoders;
@Nonnull
private final Class extends IBaseResource> resourceClass;
@Nonnull
private final ResourceType resourceType;
/**
* @param configuration A {@link ServerConfiguration} object to control the behaviour of the
* executor
* @param fhirContext A {@link FhirContext} for doing FHIR stuff
* @param sparkSession A {@link SparkSession} for resolving Spark queries
* @param database A {@link Database} for retrieving resources
* @param terminologyServiceFactory A {@link TerminologyServiceFactory} for resolving terminology
* queries within parallel processing
* @param fhirEncoders A {@link FhirEncoders} object for converting data back into HAPI FHIR
* objects
* @param resourceClass A Class that extends {@link IBaseResource} that represents the type of
* resource to be searched
*/
public SearchProvider(@Nonnull final ServerConfiguration configuration,
@Nonnull final FhirContext fhirContext, @Nonnull final SparkSession sparkSession,
@Nonnull final Database database,
@Nonnull final Optional terminologyServiceFactory,
@Nonnull final FhirEncoders fhirEncoders,
@Nonnull final Class extends IBaseResource> resourceClass) {
this.configuration = configuration;
this.fhirContext = fhirContext;
this.sparkSession = sparkSession;
this.database = database;
this.terminologyServiceFactory = terminologyServiceFactory;
this.fhirEncoders = fhirEncoders;
this.resourceClass = resourceClass;
resourceType = resourceTypeFromClass(resourceClass);
}
@Override
@Nonnull
public Class extends IBaseResource> getResourceType() {
return resourceClass;
}
/**
* Handles all search requests for the resource of the nominated type with no filters.
*
* @return A {@link SearchExecutor} which will generate the {@link org.hl7.fhir.r4.model.Bundle}
* of results
*/
@Search
@OperationAccess("search")
@SuppressWarnings({"UnusedReturnValue"})
public IBundleProvider search() {
final ResourceType subjectResource = ResourceDefinition.getResourceTypeFromClass(resourceClass);
return buildSearchExecutor(subjectResource, Optional.empty());
}
/**
* Handles all search requests for the resource of the nominated type that contain filters.
*
* @param filters The AND/OR search parameters passed using the "filter" key
* @return A {@link SearchExecutor} which will generate the {@link org.hl7.fhir.r4.model.Bundle}
* of results
*/
@Search(queryName = QUERY_NAME)
@OperationAccess("search")
@SuppressWarnings({"UnusedReturnValue"})
public IBundleProvider search(
@Nullable @OptionalParam(name = FILTER_PARAM) final StringAndListParam filters) {
return buildSearchExecutor(resourceType, Optional.ofNullable(filters));
}
@Nonnull
private IBundleProvider buildSearchExecutor(@Nonnull final ResourceType subjectResource,
@Nonnull final Optional filters) {
return new SearchExecutor(configuration.getQuery(), fhirContext, sparkSession, database,
terminologyServiceFactory, fhirEncoders, subjectResource, filters);
}
}
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