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A library that can translate FHIRPath expressions into Spark queries.
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/*
* Copyright 2023 Commonwealth Scientific and Industrial Research
* Organisation (CSIRO) ABN 41 687 119 230.
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*/
package au.csiro.pathling.fhirpath.function;
import static au.csiro.pathling.QueryHelpers.join;
import static au.csiro.pathling.fhirpath.function.NamedFunction.expressionFromInput;
import static au.csiro.pathling.utilities.Preconditions.checkUserInput;
import static org.apache.spark.sql.functions.when;
import au.csiro.pathling.QueryHelpers.JoinType;
import au.csiro.pathling.fhirpath.FhirPath;
import au.csiro.pathling.fhirpath.NonLiteralPath;
import au.csiro.pathling.fhirpath.element.BooleanPath;
import jakarta.annotation.Nonnull;
import java.util.Arrays;
import org.apache.spark.sql.Column;
import org.apache.spark.sql.Dataset;
import org.apache.spark.sql.Row;
/**
* This function takes three arguments, Returns the second argument if the first argument evaluates
* to {@code true}, or the third argument otherwise.
*
* @author John Grimes
* @see iif
*/
public class IifFunction implements NamedFunction {
private static final String NAME = "iif";
@Nonnull
@Override
public FhirPath invoke(@Nonnull final NamedFunctionInput input) {
final NonLiteralPath inputPath = input.getInput();
checkUserInput(input.getArguments().size() == 3,
"3 arguments must be supplied to iif function");
final FhirPath condition = input.getArguments().get(0);
checkUserInput(condition instanceof BooleanPath,
"Condition argument to iif must be Boolean: " + condition.getExpression());
checkUserInput(condition.isSingular(),
"Condition argument to iif must be singular: " + condition.getExpression());
final BooleanPath conditionBoolean = (BooleanPath) condition;
checkUserInput(conditionBoolean.getThisColumn().isPresent(),
"Condition argument to iif function must be navigable from collection item (use $this): "
+ conditionBoolean.getExpression());
// Join the three datasets together and create a value column.
final FhirPath ifTrue = input.getArguments().get(1);
final FhirPath otherwise = input.getArguments().get(2);
final Dataset dataset = join(input.getContext(),
Arrays.asList(conditionBoolean, ifTrue, otherwise), JoinType.LEFT_OUTER);
final Column valueColumn =
when(conditionBoolean.getValueColumn().equalTo(true), ifTrue.getValueColumn())
.otherwise(otherwise.getValueColumn());
// Build a new ElementPath based on the type of the literal `ifTrue` and `otherwise` arguments,
// and populate it with the dataset and calculated value column.
final String expression = expressionFromInput(input, NAME);
return ifTrue.combineWith(otherwise, dataset, expression, inputPath.getIdColumn(),
inputPath.getEidColumn(), valueColumn, inputPath.isSingular(), inputPath.getThisColumn());
}
}