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Interact with a FHIR terminology server from Spark.
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/*
 * Copyright 2022 Commonwealth Scientific and Industrial Research
 * Organisation (CSIRO) ABN 41 687 119 230.
 *
 * Licensed under the Apache License, Version 2.0 (the "License");
 * you may not use this file except in compliance with the License.
 * You may obtain a copy of the License at
 *
 *     http://www.apache.org/licenses/LICENSE-2.0
 *
 * Unless required by applicable law or agreed to in writing, software
 * distributed under the License is distributed on an "AS IS" BASIS,
 * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 * See the License for the specific language governing permissions and
 * limitations under the License.
 */

package au.csiro.pathling.fhirpath.encoding;

import java.util.List;
import javax.annotation.Nonnull;
import javax.annotation.Nullable;
import org.apache.spark.sql.Column;
import org.apache.spark.sql.Row;
import org.apache.spark.sql.RowFactory;
import org.apache.spark.sql.functions;
import org.apache.spark.sql.types.DataTypes;
import org.apache.spark.sql.types.Metadata;
import org.apache.spark.sql.types.MetadataBuilder;
import org.apache.spark.sql.types.StructField;
import org.apache.spark.sql.types.StructType;
import org.hl7.fhir.r4.model.Coding;


/**
 * Object decoders/encoders for {@link Coding} and collections of it.
 */
public interface CodingEncoding {

  /**
   * @return a {@link StructType} that can house a Coding
   */
  @Nonnull
  static StructType codingStructType() {
    final Metadata metadata = new MetadataBuilder().build();
    final StructField id = new StructField("id", DataTypes.StringType, true, metadata);
    final StructField system = new StructField("system", DataTypes.StringType, true, metadata);
    final StructField version = new StructField("version", DataTypes.StringType, true, metadata);
    final StructField code = new StructField("code", DataTypes.StringType, true, metadata);
    final StructField display = new StructField("display", DataTypes.StringType, true, metadata);
    final StructField userSelected = new StructField("userSelected", DataTypes.BooleanType, true,
        metadata);
    final StructField fid = new StructField("_fid", DataTypes.IntegerType, true,
        metadata);
    return new StructType(new StructField[]{id, system, version, code, display, userSelected, fid});
  }

  /**
   * A {@link StructType} for a Coding.
   */
  StructType DATA_TYPE = codingStructType();

  int SYSTEM_INDEX = DATA_TYPE.fieldIndex("system");
  int VERSION_INDEX = DATA_TYPE.fieldIndex("version");
  int CODE_INDEX = DATA_TYPE.fieldIndex("code");
  int DISPLAY_INDEX = DATA_TYPE.fieldIndex("display");
  int USER_SELECTED_INDEX = DATA_TYPE.fieldIndex("userSelected");


  /**
   * Encodes a Coding to a Row (spark SQL compatible type)
   *
   * @param coding a coding to encode
   * @return the Row representation of the coding
   */
  @Nullable
  static Row encode(@Nullable final Coding coding) {
    if (coding == null) {
      return null;
    } else {
      final Boolean userSelected = coding.hasUserSelected()
                                   ? coding.getUserSelected()
                                   : null;
      return RowFactory.create(coding.getId(), coding.getSystem(), coding.getVersion(),
          coding.getCode(), coding.getDisplay(), userSelected, null /* _fid */);
    }
  }

  /**
   * Decodes a Coding from a Row.
   *
   * @param row the row to decode
   * @return the resulting Coding
   */
  static Coding decode(@Nonnull final Row row) {
    final Coding coding = new Coding();
    coding.setSystem(row.getString(SYSTEM_INDEX));
    coding.setVersion(row.getString(VERSION_INDEX));
    coding.setCode(row.getString(CODE_INDEX));
    coding.setDisplay(row.getString(DISPLAY_INDEX));
    if (!row.isNullAt(USER_SELECTED_INDEX)) {
      coding.setUserSelected(row.getBoolean(USER_SELECTED_INDEX));
    }
    return coding;
  }

  /**
   * Encodes a  list of Codings to a Row[] (spark SQL compatible type)
   *
   * @param codings a  list of codings to encode
   * @return the Row[] representation of the coding
   */
  @Nullable
  static Row[] encodeList(@Nullable final List codings) {
    return codings == null
           ? null
           : codings.stream().map(CodingEncoding::encode).toArray(Row[]::new);
  }

  @Nonnull
  public static Column toStruct(@Nonnull final Column id, @Nonnull final Column system,
      @Nonnull final Column version, @Nonnull final Column code, @Nonnull final Column display,
      @Nonnull final Column userSelected) {
    return functions.struct(
        id.as("id"),
        system.as("system"),
        version.as("version"),
        code.as("code"),
        display.as("display"),
        userSelected.as("userSelected")
    );
  }
 
}