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singa-sequence from group bio.singa (version 0.7.0)

Group: bio.singa Artifact: singa-sequence
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Artifact singa-sequence
Group bio.singa
Version 0.7.0
Last update 23. September 2020
Organization not specified
URL Not specified
License not specified
Dependencies amount 1
Dependencies singa-structure,
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singa-features from group bio.singa (version 0.7.0)

The features package of SiNGA allows for automated retrieval and annotation of features to arbitrary data structures. This package also provides common units for biological features as well as common identifier patterns for biological databases.

Group: bio.singa Artifact: singa-features
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Artifact singa-features
Group bio.singa
Version 0.7.0
Last update 23. September 2020
Organization not specified
URL Not specified
License not specified
Dependencies amount 1
Dependencies indriya,
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singa-simulation from group bio.singa (version 0.7.0)

Group: bio.singa Artifact: singa-simulation
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Artifact singa-simulation
Group bio.singa
Version 0.7.0
Last update 23. September 2020
Organization not specified
URL Not specified
License not specified
Dependencies amount 1
Dependencies singa-chemistry,
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singa-all from group bio.singa (version 0.7.0)

SiNGA (Simulation of Natural Systems using Graph Automata) is an open-source library containing tools especially for structural bioinformatics and systems biology.

Group: bio.singa Artifact: singa-all
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Artifact singa-all
Group bio.singa
Version 0.7.0
Last update 23. September 2020
Organization not specified
URL https://github.com/singa-bio/singa
License GNU GPL v3
Dependencies amount 1
Dependencies slf4j-api,
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singa-core from group bio.singa (version 0.7.0)

The SiNGA core package contains some convenience methods and data structures required in most other SiNGA packages.

Group: bio.singa Artifact: singa-core
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Artifact singa-core
Group bio.singa
Version 0.7.0
Last update 23. September 2020
Organization not specified
URL Not specified
License not specified
Dependencies amount 0
Dependencies No dependencies
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singa-javafx from group bio.singa (version 0.7.0)

The javafx package of SiNGA provides methods to render visual representations SiNGA data structures in javafx contexts.

Group: bio.singa Artifact: singa-javafx
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Artifact singa-javafx
Group bio.singa
Version 0.7.0
Last update 23. September 2020
Organization not specified
URL Not specified
License not specified
Dependencies amount 4
Dependencies javafx-controls, singa-chemistry, singa-sequence, jfreesvg,
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singa-mathematics from group bio.singa (version 0.7.0)

The SiNGA mathematics package handles most of the algorithms and data structures with mathematical background. Amongst others: affinity propagation, graph isomorphism, or voronoi diagram creation.

Group: bio.singa Artifact: singa-mathematics
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Artifact singa-mathematics
Group bio.singa
Version 0.7.0
Last update 23. September 2020
Organization not specified
URL Not specified
License not specified
Dependencies amount 1
Dependencies singa-core,
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singa-chemistry from group bio.singa (version 0.7.0)

The chemistry package of SiNGA handles aspects that range into chemoinformatics, such as parsing and manipulation of chemical entities as well as their annotation with features.

Group: bio.singa Artifact: singa-chemistry
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Artifact singa-chemistry
Group bio.singa
Version 0.7.0
Last update 23. September 2020
Organization not specified
URL Not specified
License not specified
Dependencies amount 4
Dependencies singa-features, singa-mathematics, beam-core, beam-func,
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singa-structure from group bio.singa (version 0.7.0)

Group: bio.singa Artifact: singa-structure
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Artifact singa-structure
Group bio.singa
Version 0.7.0
Last update 23. September 2020
Organization not specified
URL Not specified
License not specified
Dependencies amount 5
Dependencies singa-mathematics, singa-features, singa-chemistry, mmtf-codec, mmtf-api,
There are maybe transitive dependencies!

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