ca.uhn.fhir.model.dstu.resource.GVFMeta Maven / Gradle / Ivy
package ca.uhn.fhir.model.dstu.resource;
import java.util.*;
import ca.uhn.fhir.model.api.*;
import ca.uhn.fhir.model.api.annotation.*;
import ca.uhn.fhir.rest.gclient.*;
import ca.uhn.fhir.model.dstu.composite.AddressDt;
import ca.uhn.fhir.model.dstu.valueset.AdministrativeGenderCodesEnum;
import ca.uhn.fhir.model.dstu.valueset.AdmitSourceEnum;
import ca.uhn.fhir.model.dstu.resource.AdverseReaction;
import ca.uhn.fhir.model.dstu.valueset.AggregationModeEnum;
import ca.uhn.fhir.model.dstu.valueset.AlertStatusEnum;
import ca.uhn.fhir.model.dstu.resource.AllergyIntolerance;
import ca.uhn.fhir.model.dstu.valueset.AnimalSpeciesEnum;
import ca.uhn.fhir.model.dstu.resource.Appointment;
import ca.uhn.fhir.model.dstu.composite.AttachmentDt;
import ca.uhn.fhir.model.dstu.resource.Availability;
import ca.uhn.fhir.model.dstu.valueset.BindingConformanceEnum;
import ca.uhn.fhir.model.dstu.resource.CarePlan;
import ca.uhn.fhir.model.dstu.valueset.CarePlanActivityCategoryEnum;
import ca.uhn.fhir.model.dstu.valueset.CarePlanActivityStatusEnum;
import ca.uhn.fhir.model.dstu.valueset.CarePlanGoalStatusEnum;
import ca.uhn.fhir.model.dstu.valueset.CarePlanStatusEnum;
import ca.uhn.fhir.model.dstu.valueset.CausalityExpectationEnum;
import ca.uhn.fhir.model.dstu.composite.CodeableConceptDt;
import ca.uhn.fhir.model.dstu.composite.CodingDt;
import ca.uhn.fhir.model.dstu.valueset.CompositionAttestationModeEnum;
import ca.uhn.fhir.model.dstu.valueset.CompositionStatusEnum;
import ca.uhn.fhir.model.dstu.valueset.ConceptMapEquivalenceEnum;
import ca.uhn.fhir.model.dstu.resource.Condition;
import ca.uhn.fhir.model.dstu.valueset.ConditionRelationshipTypeEnum;
import ca.uhn.fhir.model.dstu.valueset.ConditionStatusEnum;
import ca.uhn.fhir.model.dstu.valueset.ConformanceEventModeEnum;
import ca.uhn.fhir.model.dstu.valueset.ConformanceStatementStatusEnum;
import ca.uhn.fhir.model.dstu.valueset.ConstraintSeverityEnum;
import ca.uhn.fhir.model.dstu.composite.ContactDt;
import ca.uhn.fhir.model.dstu.valueset.ContactUseEnum;
import ca.uhn.fhir.model.dstu.valueset.CriticalityEnum;
import ca.uhn.fhir.model.dstu.valueset.DataTypeEnum;
import ca.uhn.fhir.model.dstu.resource.Device;
import ca.uhn.fhir.model.dstu.resource.DeviceObservationReport;
import ca.uhn.fhir.model.dstu.resource.DiagnosticOrder;
import ca.uhn.fhir.model.dstu.valueset.DiagnosticOrderPriorityEnum;
import ca.uhn.fhir.model.dstu.valueset.DiagnosticOrderStatusEnum;
import ca.uhn.fhir.model.dstu.resource.DiagnosticReport;
import ca.uhn.fhir.model.dstu.valueset.DiagnosticReportStatusEnum;
import ca.uhn.fhir.model.dstu.resource.DocumentManifest;
import ca.uhn.fhir.model.dstu.valueset.DocumentModeEnum;
import ca.uhn.fhir.model.dstu.resource.DocumentReference;
import ca.uhn.fhir.model.dstu.valueset.DocumentReferenceStatusEnum;
import ca.uhn.fhir.model.dstu.valueset.DocumentRelationshipTypeEnum;
import ca.uhn.fhir.model.dstu.resource.Encounter;
import ca.uhn.fhir.model.dstu.valueset.EncounterClassEnum;
import ca.uhn.fhir.model.dstu.valueset.EncounterStateEnum;
import ca.uhn.fhir.model.dstu.valueset.EncounterTypeEnum;
import ca.uhn.fhir.model.dstu.valueset.ExposureTypeEnum;
import ca.uhn.fhir.model.dstu.valueset.ExtensionContextEnum;
import ca.uhn.fhir.model.dstu.valueset.FHIRDefinedTypeEnum;
import ca.uhn.fhir.model.dstu.resource.FamilyHistory;
import ca.uhn.fhir.model.dstu.valueset.FilterOperatorEnum;
import ca.uhn.fhir.model.dstu.resource.GVFMeta;
import ca.uhn.fhir.model.dstu.resource.Group;
import ca.uhn.fhir.model.dstu.valueset.GroupTypeEnum;
import ca.uhn.fhir.model.dstu.valueset.HierarchicalRelationshipTypeEnum;
import ca.uhn.fhir.model.dstu.composite.HumanNameDt;
import ca.uhn.fhir.model.dstu.composite.IdentifierDt;
import ca.uhn.fhir.model.dstu.valueset.IdentifierUseEnum;
import ca.uhn.fhir.model.dstu.valueset.ImagingModalityEnum;
import ca.uhn.fhir.model.dstu.resource.ImagingStudy;
import ca.uhn.fhir.model.dstu.resource.Immunization;
import ca.uhn.fhir.model.dstu.valueset.ImmunizationReasonCodesEnum;
import ca.uhn.fhir.model.dstu.resource.ImmunizationRecommendation;
import ca.uhn.fhir.model.dstu.valueset.ImmunizationRecommendationDateCriterionCodesEnum;
import ca.uhn.fhir.model.dstu.valueset.ImmunizationRecommendationStatusCodesEnum;
import ca.uhn.fhir.model.dstu.valueset.ImmunizationRouteCodesEnum;
import ca.uhn.fhir.model.dstu.valueset.InstanceAvailabilityEnum;
import ca.uhn.fhir.model.dstu.valueset.IssueSeverityEnum;
import ca.uhn.fhir.model.dstu.valueset.IssueTypeEnum;
import ca.uhn.fhir.model.dstu.valueset.LinkTypeEnum;
import ca.uhn.fhir.model.dstu.valueset.ListModeEnum;
import ca.uhn.fhir.model.dstu.resource.Location;
import ca.uhn.fhir.model.dstu.valueset.LocationModeEnum;
import ca.uhn.fhir.model.dstu.valueset.LocationStatusEnum;
import ca.uhn.fhir.model.dstu.valueset.LocationTypeEnum;
import ca.uhn.fhir.model.dstu.valueset.MaritalStatusCodesEnum;
import ca.uhn.fhir.model.dstu.resource.Media;
import ca.uhn.fhir.model.dstu.valueset.MediaTypeEnum;
import ca.uhn.fhir.model.dstu.resource.Medication;
import ca.uhn.fhir.model.dstu.resource.MedicationAdministration;
import ca.uhn.fhir.model.dstu.valueset.MedicationAdministrationStatusEnum;
import ca.uhn.fhir.model.dstu.resource.MedicationDispense;
import ca.uhn.fhir.model.dstu.valueset.MedicationDispenseStatusEnum;
import ca.uhn.fhir.model.dstu.valueset.MedicationKindEnum;
import ca.uhn.fhir.model.dstu.resource.MedicationPrescription;
import ca.uhn.fhir.model.dstu.valueset.MedicationPrescriptionStatusEnum;
import ca.uhn.fhir.model.dstu.resource.MedicationStatement;
import ca.uhn.fhir.model.dstu.valueset.MessageEventEnum;
import ca.uhn.fhir.model.dstu.valueset.MessageSignificanceCategoryEnum;
import ca.uhn.fhir.model.dstu.valueset.MessageTransportEnum;
import ca.uhn.fhir.model.dstu.resource.Microarray;
import ca.uhn.fhir.model.dstu.valueset.ModalityEnum;
import ca.uhn.fhir.model.dstu.resource.Observation;
import ca.uhn.fhir.model.dstu.valueset.ObservationRelationshipTypeEnum;
import ca.uhn.fhir.model.dstu.valueset.ObservationReliabilityEnum;
import ca.uhn.fhir.model.dstu.valueset.ObservationStatusEnum;
import ca.uhn.fhir.model.dstu.resource.OperationOutcome;
import ca.uhn.fhir.model.dstu.resource.Order;
import ca.uhn.fhir.model.dstu.valueset.OrderOutcomeStatusEnum;
import ca.uhn.fhir.model.dstu.resource.Organization;
import ca.uhn.fhir.model.dstu.valueset.OrganizationTypeEnum;
import ca.uhn.fhir.model.dstu.valueset.ParticipantTypeEnum;
import ca.uhn.fhir.model.dstu.resource.Patient;
import ca.uhn.fhir.model.dstu.composite.PeriodDt;
import ca.uhn.fhir.model.dstu.resource.Practitioner;
import ca.uhn.fhir.model.dstu.valueset.PractitionerRoleEnum;
import ca.uhn.fhir.model.dstu.valueset.PractitionerSpecialtyEnum;
import ca.uhn.fhir.model.dstu.resource.Procedure;
import ca.uhn.fhir.model.dstu.valueset.ProcedureRelationshipTypeEnum;
import ca.uhn.fhir.model.dstu.resource.Profile;
import ca.uhn.fhir.model.dstu.valueset.PropertyRepresentationEnum;
import ca.uhn.fhir.model.dstu.valueset.ProvenanceEntityRoleEnum;
import ca.uhn.fhir.model.dstu.valueset.QuantityCompararatorEnum;
import ca.uhn.fhir.model.dstu.composite.QuantityDt;
import ca.uhn.fhir.model.dstu.valueset.QueryOutcomeEnum;
import ca.uhn.fhir.model.dstu.valueset.QuestionnaireGroupNameEnum;
import ca.uhn.fhir.model.dstu.valueset.QuestionnaireNameEnum;
import ca.uhn.fhir.model.dstu.valueset.QuestionnaireStatusEnum;
import ca.uhn.fhir.model.dstu.composite.RangeDt;
import ca.uhn.fhir.model.dstu.composite.RatioDt;
import ca.uhn.fhir.model.dstu.valueset.ReactionSeverityEnum;
import ca.uhn.fhir.model.dstu.resource.RelatedPerson;
import ca.uhn.fhir.model.dstu.valueset.ResourceProfileStatusEnum;
import ca.uhn.fhir.model.dstu.valueset.ResourceTypeEnum;
import ca.uhn.fhir.model.dstu.valueset.ResponseTypeEnum;
import ca.uhn.fhir.model.dstu.valueset.RestfulConformanceModeEnum;
import ca.uhn.fhir.model.dstu.valueset.RestfulOperationSystemEnum;
import ca.uhn.fhir.model.dstu.valueset.RestfulOperationTypeEnum;
import ca.uhn.fhir.model.dstu.valueset.RestfulSecurityServiceEnum;
import ca.uhn.fhir.model.dstu.composite.SampledDataDt;
import ca.uhn.fhir.model.dstu.composite.ScheduleDt;
import ca.uhn.fhir.model.dstu.valueset.SearchParamTypeEnum;
import ca.uhn.fhir.model.dstu.valueset.SecurityEventActionEnum;
import ca.uhn.fhir.model.dstu.valueset.SecurityEventObjectLifecycleEnum;
import ca.uhn.fhir.model.dstu.valueset.SecurityEventObjectRoleEnum;
import ca.uhn.fhir.model.dstu.valueset.SecurityEventObjectTypeEnum;
import ca.uhn.fhir.model.dstu.valueset.SecurityEventOutcomeEnum;
import ca.uhn.fhir.model.dstu.valueset.SecurityEventParticipantNetworkTypeEnum;
import ca.uhn.fhir.model.dstu.valueset.SecurityEventSourceTypeEnum;
import ca.uhn.fhir.model.dstu.valueset.SensitivityStatusEnum;
import ca.uhn.fhir.model.dstu.valueset.SensitivityTypeEnum;
import ca.uhn.fhir.model.dstu.resource.SequencingAnalysis;
import ca.uhn.fhir.model.dstu.resource.SequencingLab;
import ca.uhn.fhir.model.dstu.valueset.SlicingRulesEnum;
import ca.uhn.fhir.model.dstu.resource.Slot;
import ca.uhn.fhir.model.dstu.resource.Specimen;
import ca.uhn.fhir.model.dstu.valueset.SpecimenCollectionMethodEnum;
import ca.uhn.fhir.model.dstu.resource.Substance;
import ca.uhn.fhir.model.dstu.valueset.SupplyDispenseStatusEnum;
import ca.uhn.fhir.model.dstu.valueset.SupplyItemTypeEnum;
import ca.uhn.fhir.model.dstu.valueset.SupplyStatusEnum;
import ca.uhn.fhir.model.dstu.valueset.SupplyTypeEnum;
import ca.uhn.fhir.model.api.TemporalPrecisionEnum;
import ca.uhn.fhir.model.dstu.resource.ValueSet;
import ca.uhn.fhir.model.dstu.valueset.ValueSetStatusEnum;
import ca.uhn.fhir.model.api.ExtensionDt;
import ca.uhn.fhir.model.api.IResource;
import ca.uhn.fhir.model.dstu.composite.AgeDt;
import ca.uhn.fhir.model.dstu.composite.DurationDt;
import ca.uhn.fhir.model.dstu.composite.ResourceReferenceDt;
import ca.uhn.fhir.model.dstu.resource.Binary;
import ca.uhn.fhir.model.primitive.Base64BinaryDt;
import ca.uhn.fhir.model.primitive.BooleanDt;
import ca.uhn.fhir.model.primitive.BoundCodeDt;
import ca.uhn.fhir.model.primitive.BoundCodeableConceptDt;
import ca.uhn.fhir.model.primitive.CodeDt;
import ca.uhn.fhir.model.primitive.DateDt;
import ca.uhn.fhir.model.primitive.DateTimeDt;
import ca.uhn.fhir.model.primitive.DecimalDt;
import ca.uhn.fhir.model.primitive.IdDt;
import ca.uhn.fhir.model.primitive.IdrefDt;
import ca.uhn.fhir.model.primitive.InstantDt;
import ca.uhn.fhir.model.primitive.IntegerDt;
import ca.uhn.fhir.model.primitive.OidDt;
import ca.uhn.fhir.model.primitive.StringDt;
import ca.uhn.fhir.model.primitive.UriDt;
/**
* HAPI/FHIR GVFMeta Resource
* (Meta data of a GVF file)
*
*
* Definition:
* Pragmas from a GVF
*
*
*
* Requirements:
*
*
*
*
* Profile Definition:
* http://hl7.org/fhir/profiles/GVFMeta
*
*
*/
@ResourceDef(name="GVFMeta", profile="http://hl7.org/fhir/profiles/GVFMeta", id="gvfmeta")
public class GVFMeta extends ca.uhn.fhir.model.dstu.resource.BaseResource
implements IResource {
/**
* Search parameter constant for patient
*
* Description: Patient being described in the file
* Type: reference
* Path: GVFMeta.subject.patient
*
*/
@SearchParamDefinition(name="patient", path="GVFMeta.subject.patient", description="Patient being described in the file", type="reference" )
public static final String SP_PATIENT = "patient";
/**
* Fluent Client search parameter constant for patient
*
* Description: Patient being described in the file
* Type: reference
* Path: GVFMeta.subject.patient
*
*/
public static final ReferenceClientParam PATIENT = new ReferenceClientParam(SP_PATIENT);
/**
* Constant for fluent queries to be used to add include statements. Specifies
* the path value of "GVFMeta.subject.patient".
*/
public static final Include INCLUDE_SUBJECT_PATIENT = new Include("GVFMeta.subject.patient");
/**
* Search parameter constant for file
*
* Description: URL to source file of the resource
* Type: string
* Path: GVFMeta.sourceFile
*
*/
@SearchParamDefinition(name="file", path="GVFMeta.sourceFile", description="URL to source file of the resource", type="string" )
public static final String SP_FILE = "file";
/**
* Fluent Client search parameter constant for file
*
* Description: URL to source file of the resource
* Type: string
* Path: GVFMeta.sourceFile
*
*/
public static final StringClientParam FILE = new StringClientParam(SP_FILE);
@Child(name="subject", order=0, min=0, max=Child.MAX_UNLIMITED, summary=false, modifier=false)
@Description(
shortDefinition="Subject being described by the file",
formalDefinition="Subject being described by the file"
)
private java.util.List mySubject;
@Child(name="sourceFile", type=AttachmentDt.class, order=1, min=1, max=1, summary=false, modifier=false)
@Description(
shortDefinition="Source GVF file",
formalDefinition="GVF file from which data of the resource is extracted"
)
private AttachmentDt mySourceFile;
@Child(name="gvfVersion", type=CodeDt.class, order=2, min=0, max=1, summary=false, modifier=false)
@Description(
shortDefinition="Version of the GVF file",
formalDefinition="Valid version of the GVF file"
)
private CodeDt myGvfVersion;
@Child(name="referenceFasta", type=UriDt.class, order=3, min=0, max=1, summary=false, modifier=false)
@Description(
shortDefinition="FASTA file used as reference assembly",
formalDefinition="URL to FASTA file used as reference assembly"
)
private UriDt myReferenceFasta;
@Child(name="featureGFF3", type=UriDt.class, order=4, min=0, max=1, summary=false, modifier=false)
@Description(
shortDefinition="GFF3 file containing feature being described in the file",
formalDefinition="GFF3 file containing feature being described in the file"
)
private UriDt myFeatureGFF3;
@Child(name="fileDate", type=DateDt.class, order=5, min=0, max=1, summary=false, modifier=false)
@Description(
shortDefinition="Date when the file is updated",
formalDefinition="Date when the file is updated"
)
private DateDt myFileDate;
@Child(name="individual", type=StringDt.class, order=6, min=0, max=Child.MAX_UNLIMITED, summary=false, modifier=false)
@Description(
shortDefinition="Id of individual being described in the file",
formalDefinition="Id of individual being described in the file"
)
private java.util.List myIndividual;
@Child(name="population", type=CodeDt.class, order=7, min=0, max=1, summary=false, modifier=false)
@Description(
shortDefinition="Code for population which the individual can be categorized into",
formalDefinition="Code for population which the individual can be categorized into"
)
private CodeDt myPopulation;
@Child(name="platform", order=8, min=0, max=1, summary=false, modifier=false)
@Description(
shortDefinition="Sequencing platform",
formalDefinition="Technology platform used in the sequencing"
)
private Platform myPlatform;
@Child(name="sequencingScope", type=CodeDt.class, order=9, min=0, max=1, summary=false, modifier=false)
@Description(
shortDefinition="Sequencing scope",
formalDefinition="Scope of the sequencing"
)
private CodeDt mySequencingScope;
@Child(name="captureMethod", type=CodeDt.class, order=10, min=0, max=1, summary=false, modifier=false)
@Description(
shortDefinition="Capture method",
formalDefinition="Capture method used in the sequencing"
)
private CodeDt myCaptureMethod;
@Child(name="captureRegions", type=UriDt.class, order=11, min=0, max=1, summary=false, modifier=false)
@Description(
shortDefinition="Region captured in the file",
formalDefinition="Region captured in the file"
)
private UriDt myCaptureRegions;
@Child(name="sequenceAlignment", type=StringDt.class, order=12, min=0, max=1, summary=false, modifier=false)
@Description(
shortDefinition="Sequence alignment algorithm/pipline used",
formalDefinition="Sequence alignment algorithm/pipline used"
)
private StringDt mySequenceAlignment;
@Child(name="variantCalling", type=StringDt.class, order=13, min=0, max=1, summary=false, modifier=false)
@Description(
shortDefinition="Pipline used for variant calling",
formalDefinition="Pipline used for variant calling"
)
private StringDt myVariantCalling;
@Child(name="sampleDescription", type=StringDt.class, order=14, min=0, max=1, summary=false, modifier=false)
@Description(
shortDefinition="Description of sample used in the sequencing",
formalDefinition="Description of sample used in the sequencing"
)
private StringDt mySampleDescription;
@Child(name="genomicSource", type=CodeDt.class, order=15, min=0, max=1, summary=false, modifier=false)
@Description(
shortDefinition="Source of the sample",
formalDefinition="Source of the sample"
)
private CodeDt myGenomicSource;
@Override
public boolean isEmpty() {
return super.isBaseEmpty() && ca.uhn.fhir.util.ElementUtil.isEmpty( mySubject, mySourceFile, myGvfVersion, myReferenceFasta, myFeatureGFF3, myFileDate, myIndividual, myPopulation, myPlatform, mySequencingScope, myCaptureMethod, myCaptureRegions, mySequenceAlignment, myVariantCalling, mySampleDescription, myGenomicSource);
}
@Override
public List getAllPopulatedChildElementsOfType(Class theType) {
return ca.uhn.fhir.util.ElementUtil.allPopulatedChildElements(theType, mySubject, mySourceFile, myGvfVersion, myReferenceFasta, myFeatureGFF3, myFileDate, myIndividual, myPopulation, myPlatform, mySequencingScope, myCaptureMethod, myCaptureRegions, mySequenceAlignment, myVariantCalling, mySampleDescription, myGenomicSource);
}
/**
* Gets the value(s) for subject (Subject being described by the file).
* creating it if it does
* not exist. Will not return null.
*
*
* Definition:
* Subject being described by the file
*
*/
public java.util.List getSubject() {
if (mySubject == null) {
mySubject = new java.util.ArrayList();
}
return mySubject;
}
/**
* Gets the value(s) for subject (Subject being described by the file).
* creating it if it does
* not exist. Will not return null.
*
*
* Definition:
* Subject being described by the file
*
*/
public java.util.List getSubjectElement() {
if (mySubject == null) {
mySubject = new java.util.ArrayList();
}
return mySubject;
}
/**
* Sets the value(s) for subject (Subject being described by the file)
*
*
* Definition:
* Subject being described by the file
*
*/
public GVFMeta setSubject(java.util.List theValue) {
mySubject = theValue;
return this;
}
/**
* Adds and returns a new value for subject (Subject being described by the file)
*
*
* Definition:
* Subject being described by the file
*
*/
public Subject addSubject() {
Subject newType = new Subject();
getSubject().add(newType);
return newType;
}
/**
* Gets the first repetition for subject (Subject being described by the file),
* creating it if it does not already exist.
*
*
* Definition:
* Subject being described by the file
*
*/
public Subject getSubjectFirstRep() {
if (getSubject().isEmpty()) {
return addSubject();
}
return getSubject().get(0);
}
/**
* Gets the value(s) for sourceFile (Source GVF file).
* creating it if it does
* not exist. Will not return null.
*
*
* Definition:
* GVF file from which data of the resource is extracted
*
*/
public AttachmentDt getSourceFile() {
if (mySourceFile == null) {
mySourceFile = new AttachmentDt();
}
return mySourceFile;
}
/**
* Gets the value(s) for sourceFile (Source GVF file).
* creating it if it does
* not exist. Will not return null.
*
*
* Definition:
* GVF file from which data of the resource is extracted
*
*/
public AttachmentDt getSourceFileElement() {
if (mySourceFile == null) {
mySourceFile = new AttachmentDt();
}
return mySourceFile;
}
/**
* Sets the value(s) for sourceFile (Source GVF file)
*
*
* Definition:
* GVF file from which data of the resource is extracted
*
*/
public GVFMeta setSourceFile(AttachmentDt theValue) {
mySourceFile = theValue;
return this;
}
/**
* Gets the value(s) for gvfVersion (Version of the GVF file).
* creating it if it does
* not exist. Will not return null.
*
*
* Definition:
* Valid version of the GVF file
*
*/
public CodeDt getGvfVersion() {
if (myGvfVersion == null) {
myGvfVersion = new CodeDt();
}
return myGvfVersion;
}
/**
* Gets the value(s) for gvfVersion (Version of the GVF file).
* creating it if it does
* not exist. Will not return null.
*
*
* Definition:
* Valid version of the GVF file
*
*/
public CodeDt getGvfVersionElement() {
if (myGvfVersion == null) {
myGvfVersion = new CodeDt();
}
return myGvfVersion;
}
/**
* Sets the value(s) for gvfVersion (Version of the GVF file)
*
*
* Definition:
* Valid version of the GVF file
*
*/
public GVFMeta setGvfVersion(CodeDt theValue) {
myGvfVersion = theValue;
return this;
}
/**
* Sets the value for gvfVersion (Version of the GVF file)
*
*
* Definition:
* Valid version of the GVF file
*
*/
public GVFMeta setGvfVersion( String theCode) {
myGvfVersion = new CodeDt(theCode);
return this;
}
/**
* Gets the value(s) for referenceFasta (FASTA file used as reference assembly).
* creating it if it does
* not exist. Will not return null.
*
*
* Definition:
* URL to FASTA file used as reference assembly
*
*/
public UriDt getReferenceFasta() {
if (myReferenceFasta == null) {
myReferenceFasta = new UriDt();
}
return myReferenceFasta;
}
/**
* Gets the value(s) for referenceFasta (FASTA file used as reference assembly).
* creating it if it does
* not exist. Will not return null.
*
*
* Definition:
* URL to FASTA file used as reference assembly
*
*/
public UriDt getReferenceFastaElement() {
if (myReferenceFasta == null) {
myReferenceFasta = new UriDt();
}
return myReferenceFasta;
}
/**
* Sets the value(s) for referenceFasta (FASTA file used as reference assembly)
*
*
* Definition:
* URL to FASTA file used as reference assembly
*
*/
public GVFMeta setReferenceFasta(UriDt theValue) {
myReferenceFasta = theValue;
return this;
}
/**
* Sets the value for referenceFasta (FASTA file used as reference assembly)
*
*
* Definition:
* URL to FASTA file used as reference assembly
*
*/
public GVFMeta setReferenceFasta( String theUri) {
myReferenceFasta = new UriDt(theUri);
return this;
}
/**
* Gets the value(s) for featureGFF3 (GFF3 file containing feature being described in the file).
* creating it if it does
* not exist. Will not return null.
*
*
* Definition:
* GFF3 file containing feature being described in the file
*
*/
public UriDt getFeatureGFF3() {
if (myFeatureGFF3 == null) {
myFeatureGFF3 = new UriDt();
}
return myFeatureGFF3;
}
/**
* Gets the value(s) for featureGFF3 (GFF3 file containing feature being described in the file).
* creating it if it does
* not exist. Will not return null.
*
*
* Definition:
* GFF3 file containing feature being described in the file
*
*/
public UriDt getFeatureGFF3Element() {
if (myFeatureGFF3 == null) {
myFeatureGFF3 = new UriDt();
}
return myFeatureGFF3;
}
/**
* Sets the value(s) for featureGFF3 (GFF3 file containing feature being described in the file)
*
*
* Definition:
* GFF3 file containing feature being described in the file
*
*/
public GVFMeta setFeatureGFF3(UriDt theValue) {
myFeatureGFF3 = theValue;
return this;
}
/**
* Sets the value for featureGFF3 (GFF3 file containing feature being described in the file)
*
*
* Definition:
* GFF3 file containing feature being described in the file
*
*/
public GVFMeta setFeatureGFF3( String theUri) {
myFeatureGFF3 = new UriDt(theUri);
return this;
}
/**
* Gets the value(s) for fileDate (Date when the file is updated).
* creating it if it does
* not exist. Will not return null.
*
*
* Definition:
* Date when the file is updated
*
*/
public DateDt getFileDate() {
if (myFileDate == null) {
myFileDate = new DateDt();
}
return myFileDate;
}
/**
* Gets the value(s) for fileDate (Date when the file is updated).
* creating it if it does
* not exist. Will not return null.
*
*
* Definition:
* Date when the file is updated
*
*/
public DateDt getFileDateElement() {
if (myFileDate == null) {
myFileDate = new DateDt();
}
return myFileDate;
}
/**
* Sets the value(s) for fileDate (Date when the file is updated)
*
*
* Definition:
* Date when the file is updated
*
*/
public GVFMeta setFileDate(DateDt theValue) {
myFileDate = theValue;
return this;
}
/**
* Sets the value for fileDate (Date when the file is updated)
*
*
* Definition:
* Date when the file is updated
*
*/
public GVFMeta setFileDate( Date theDate, TemporalPrecisionEnum thePrecision) {
myFileDate = new DateDt(theDate, thePrecision);
return this;
}
/**
* Sets the value for fileDate (Date when the file is updated)
*
*
* Definition:
* Date when the file is updated
*
*/
public GVFMeta setFileDateWithDayPrecision( Date theDate) {
myFileDate = new DateDt(theDate);
return this;
}
/**
* Gets the value(s) for individual (Id of individual being described in the file).
* creating it if it does
* not exist. Will not return null.
*
*
* Definition:
* Id of individual being described in the file
*
*/
public java.util.List getIndividual() {
if (myIndividual == null) {
myIndividual = new java.util.ArrayList();
}
return myIndividual;
}
/**
* Gets the value(s) for individual (Id of individual being described in the file).
* creating it if it does
* not exist. Will not return null.
*
*
* Definition:
* Id of individual being described in the file
*
*/
public java.util.List getIndividualElement() {
if (myIndividual == null) {
myIndividual = new java.util.ArrayList();
}
return myIndividual;
}
/**
* Sets the value(s) for individual (Id of individual being described in the file)
*
*
* Definition:
* Id of individual being described in the file
*
*/
public GVFMeta setIndividual(java.util.List theValue) {
myIndividual = theValue;
return this;
}
/**
* Adds and returns a new value for individual (Id of individual being described in the file)
*
*
* Definition:
* Id of individual being described in the file
*
*/
public StringDt addIndividual() {
StringDt newType = new StringDt();
getIndividual().add(newType);
return newType;
}
/**
* Gets the first repetition for individual (Id of individual being described in the file),
* creating it if it does not already exist.
*
*
* Definition:
* Id of individual being described in the file
*
*/
public StringDt getIndividualFirstRep() {
if (getIndividual().isEmpty()) {
return addIndividual();
}
return getIndividual().get(0);
}
/**
* Adds a new value for individual (Id of individual being described in the file)
*
*
* Definition:
* Id of individual being described in the file
*
*
* @return Returns a reference to this object, to allow for simple chaining.
*/
public GVFMeta addIndividual( String theString) {
if (myIndividual == null) {
myIndividual = new java.util.ArrayList();
}
myIndividual.add(new StringDt(theString));
return this;
}
/**
* Gets the value(s) for population (Code for population which the individual can be categorized into).
* creating it if it does
* not exist. Will not return null.
*
*
* Definition:
* Code for population which the individual can be categorized into
*
*/
public CodeDt getPopulation() {
if (myPopulation == null) {
myPopulation = new CodeDt();
}
return myPopulation;
}
/**
* Gets the value(s) for population (Code for population which the individual can be categorized into).
* creating it if it does
* not exist. Will not return null.
*
*
* Definition:
* Code for population which the individual can be categorized into
*
*/
public CodeDt getPopulationElement() {
if (myPopulation == null) {
myPopulation = new CodeDt();
}
return myPopulation;
}
/**
* Sets the value(s) for population (Code for population which the individual can be categorized into)
*
*
* Definition:
* Code for population which the individual can be categorized into
*
*/
public GVFMeta setPopulation(CodeDt theValue) {
myPopulation = theValue;
return this;
}
/**
* Sets the value for population (Code for population which the individual can be categorized into)
*
*
* Definition:
* Code for population which the individual can be categorized into
*
*/
public GVFMeta setPopulation( String theCode) {
myPopulation = new CodeDt(theCode);
return this;
}
/**
* Gets the value(s) for platform (Sequencing platform).
* creating it if it does
* not exist. Will not return null.
*
*
* Definition:
* Technology platform used in the sequencing
*
*/
public Platform getPlatform() {
if (myPlatform == null) {
myPlatform = new Platform();
}
return myPlatform;
}
/**
* Gets the value(s) for platform (Sequencing platform).
* creating it if it does
* not exist. Will not return null.
*
*
* Definition:
* Technology platform used in the sequencing
*
*/
public Platform getPlatformElement() {
if (myPlatform == null) {
myPlatform = new Platform();
}
return myPlatform;
}
/**
* Sets the value(s) for platform (Sequencing platform)
*
*
* Definition:
* Technology platform used in the sequencing
*
*/
public GVFMeta setPlatform(Platform theValue) {
myPlatform = theValue;
return this;
}
/**
* Gets the value(s) for sequencingScope (Sequencing scope).
* creating it if it does
* not exist. Will not return null.
*
*
* Definition:
* Scope of the sequencing
*
*/
public CodeDt getSequencingScope() {
if (mySequencingScope == null) {
mySequencingScope = new CodeDt();
}
return mySequencingScope;
}
/**
* Gets the value(s) for sequencingScope (Sequencing scope).
* creating it if it does
* not exist. Will not return null.
*
*
* Definition:
* Scope of the sequencing
*
*/
public CodeDt getSequencingScopeElement() {
if (mySequencingScope == null) {
mySequencingScope = new CodeDt();
}
return mySequencingScope;
}
/**
* Sets the value(s) for sequencingScope (Sequencing scope)
*
*
* Definition:
* Scope of the sequencing
*
*/
public GVFMeta setSequencingScope(CodeDt theValue) {
mySequencingScope = theValue;
return this;
}
/**
* Sets the value for sequencingScope (Sequencing scope)
*
*
* Definition:
* Scope of the sequencing
*
*/
public GVFMeta setSequencingScope( String theCode) {
mySequencingScope = new CodeDt(theCode);
return this;
}
/**
* Gets the value(s) for captureMethod (Capture method).
* creating it if it does
* not exist. Will not return null.
*
*
* Definition:
* Capture method used in the sequencing
*
*/
public CodeDt getCaptureMethod() {
if (myCaptureMethod == null) {
myCaptureMethod = new CodeDt();
}
return myCaptureMethod;
}
/**
* Gets the value(s) for captureMethod (Capture method).
* creating it if it does
* not exist. Will not return null.
*
*
* Definition:
* Capture method used in the sequencing
*
*/
public CodeDt getCaptureMethodElement() {
if (myCaptureMethod == null) {
myCaptureMethod = new CodeDt();
}
return myCaptureMethod;
}
/**
* Sets the value(s) for captureMethod (Capture method)
*
*
* Definition:
* Capture method used in the sequencing
*
*/
public GVFMeta setCaptureMethod(CodeDt theValue) {
myCaptureMethod = theValue;
return this;
}
/**
* Sets the value for captureMethod (Capture method)
*
*
* Definition:
* Capture method used in the sequencing
*
*/
public GVFMeta setCaptureMethod( String theCode) {
myCaptureMethod = new CodeDt(theCode);
return this;
}
/**
* Gets the value(s) for captureRegions (Region captured in the file).
* creating it if it does
* not exist. Will not return null.
*
*
* Definition:
* Region captured in the file
*
*/
public UriDt getCaptureRegions() {
if (myCaptureRegions == null) {
myCaptureRegions = new UriDt();
}
return myCaptureRegions;
}
/**
* Gets the value(s) for captureRegions (Region captured in the file).
* creating it if it does
* not exist. Will not return null.
*
*
* Definition:
* Region captured in the file
*
*/
public UriDt getCaptureRegionsElement() {
if (myCaptureRegions == null) {
myCaptureRegions = new UriDt();
}
return myCaptureRegions;
}
/**
* Sets the value(s) for captureRegions (Region captured in the file)
*
*
* Definition:
* Region captured in the file
*
*/
public GVFMeta setCaptureRegions(UriDt theValue) {
myCaptureRegions = theValue;
return this;
}
/**
* Sets the value for captureRegions (Region captured in the file)
*
*
* Definition:
* Region captured in the file
*
*/
public GVFMeta setCaptureRegions( String theUri) {
myCaptureRegions = new UriDt(theUri);
return this;
}
/**
* Gets the value(s) for sequenceAlignment (Sequence alignment algorithm/pipline used).
* creating it if it does
* not exist. Will not return null.
*
*
* Definition:
* Sequence alignment algorithm/pipline used
*
*/
public StringDt getSequenceAlignment() {
if (mySequenceAlignment == null) {
mySequenceAlignment = new StringDt();
}
return mySequenceAlignment;
}
/**
* Gets the value(s) for sequenceAlignment (Sequence alignment algorithm/pipline used).
* creating it if it does
* not exist. Will not return null.
*
*
* Definition:
* Sequence alignment algorithm/pipline used
*
*/
public StringDt getSequenceAlignmentElement() {
if (mySequenceAlignment == null) {
mySequenceAlignment = new StringDt();
}
return mySequenceAlignment;
}
/**
* Sets the value(s) for sequenceAlignment (Sequence alignment algorithm/pipline used)
*
*
* Definition:
* Sequence alignment algorithm/pipline used
*
*/
public GVFMeta setSequenceAlignment(StringDt theValue) {
mySequenceAlignment = theValue;
return this;
}
/**
* Sets the value for sequenceAlignment (Sequence alignment algorithm/pipline used)
*
*
* Definition:
* Sequence alignment algorithm/pipline used
*
*/
public GVFMeta setSequenceAlignment( String theString) {
mySequenceAlignment = new StringDt(theString);
return this;
}
/**
* Gets the value(s) for variantCalling (Pipline used for variant calling).
* creating it if it does
* not exist. Will not return null.
*
*
* Definition:
* Pipline used for variant calling
*
*/
public StringDt getVariantCalling() {
if (myVariantCalling == null) {
myVariantCalling = new StringDt();
}
return myVariantCalling;
}
/**
* Gets the value(s) for variantCalling (Pipline used for variant calling).
* creating it if it does
* not exist. Will not return null.
*
*
* Definition:
* Pipline used for variant calling
*
*/
public StringDt getVariantCallingElement() {
if (myVariantCalling == null) {
myVariantCalling = new StringDt();
}
return myVariantCalling;
}
/**
* Sets the value(s) for variantCalling (Pipline used for variant calling)
*
*
* Definition:
* Pipline used for variant calling
*
*/
public GVFMeta setVariantCalling(StringDt theValue) {
myVariantCalling = theValue;
return this;
}
/**
* Sets the value for variantCalling (Pipline used for variant calling)
*
*
* Definition:
* Pipline used for variant calling
*
*/
public GVFMeta setVariantCalling( String theString) {
myVariantCalling = new StringDt(theString);
return this;
}
/**
* Gets the value(s) for sampleDescription (Description of sample used in the sequencing).
* creating it if it does
* not exist. Will not return null.
*
*
* Definition:
* Description of sample used in the sequencing
*
*/
public StringDt getSampleDescription() {
if (mySampleDescription == null) {
mySampleDescription = new StringDt();
}
return mySampleDescription;
}
/**
* Gets the value(s) for sampleDescription (Description of sample used in the sequencing).
* creating it if it does
* not exist. Will not return null.
*
*
* Definition:
* Description of sample used in the sequencing
*
*/
public StringDt getSampleDescriptionElement() {
if (mySampleDescription == null) {
mySampleDescription = new StringDt();
}
return mySampleDescription;
}
/**
* Sets the value(s) for sampleDescription (Description of sample used in the sequencing)
*
*
* Definition:
* Description of sample used in the sequencing
*
*/
public GVFMeta setSampleDescription(StringDt theValue) {
mySampleDescription = theValue;
return this;
}
/**
* Sets the value for sampleDescription (Description of sample used in the sequencing)
*
*
* Definition:
* Description of sample used in the sequencing
*
*/
public GVFMeta setSampleDescription( String theString) {
mySampleDescription = new StringDt(theString);
return this;
}
/**
* Gets the value(s) for genomicSource (Source of the sample).
* creating it if it does
* not exist. Will not return null.
*
*
* Definition:
* Source of the sample
*
*/
public CodeDt getGenomicSource() {
if (myGenomicSource == null) {
myGenomicSource = new CodeDt();
}
return myGenomicSource;
}
/**
* Gets the value(s) for genomicSource (Source of the sample).
* creating it if it does
* not exist. Will not return null.
*
*
* Definition:
* Source of the sample
*
*/
public CodeDt getGenomicSourceElement() {
if (myGenomicSource == null) {
myGenomicSource = new CodeDt();
}
return myGenomicSource;
}
/**
* Sets the value(s) for genomicSource (Source of the sample)
*
*
* Definition:
* Source of the sample
*
*/
public GVFMeta setGenomicSource(CodeDt theValue) {
myGenomicSource = theValue;
return this;
}
/**
* Sets the value for genomicSource (Source of the sample)
*
*
* Definition:
* Source of the sample
*
*/
public GVFMeta setGenomicSource( String theCode) {
myGenomicSource = new CodeDt(theCode);
return this;
}
/**
* Block class for child element: GVFMeta.subject (Subject being described by the file)
*
*
* Definition:
* Subject being described by the file
*
*/
@Block()
public static class Subject
extends BaseIdentifiableElement implements IResourceBlock {
@Child(name="patient", order=0, min=0, max=1, summary=false, modifier=false, type={
ca.uhn.fhir.model.dstu.resource.Patient.class })
@Description(
shortDefinition="Identity of the subejct",
formalDefinition="Identity of the subejct"
)
private ResourceReferenceDt myPatient;
@Child(name="fieldId", type=StringDt.class, order=1, min=0, max=1, summary=false, modifier=false)
@Description(
shortDefinition="Id of individual field of the file that correspond to the subject",
formalDefinition="Id of individual field of the file that correspond to the subject"
)
private StringDt myFieldId;
@Override
public boolean isEmpty() {
return super.isBaseEmpty() && ca.uhn.fhir.util.ElementUtil.isEmpty( myPatient, myFieldId);
}
@Override
public List getAllPopulatedChildElementsOfType(Class theType) {
return ca.uhn.fhir.util.ElementUtil.allPopulatedChildElements(theType, myPatient, myFieldId);
}
/**
* Gets the value(s) for patient (Identity of the subejct).
* creating it if it does
* not exist. Will not return null.
*
*
* Definition:
* Identity of the subejct
*
*/
public ResourceReferenceDt getPatient() {
if (myPatient == null) {
myPatient = new ResourceReferenceDt();
}
return myPatient;
}
/**
* Gets the value(s) for patient (Identity of the subejct).
* creating it if it does
* not exist. Will not return null.
*
*
* Definition:
* Identity of the subejct
*
*/
public ResourceReferenceDt getPatientElement() {
if (myPatient == null) {
myPatient = new ResourceReferenceDt();
}
return myPatient;
}
/**
* Sets the value(s) for patient (Identity of the subejct)
*
*
* Definition:
* Identity of the subejct
*
*/
public Subject setPatient(ResourceReferenceDt theValue) {
myPatient = theValue;
return this;
}
/**
* Gets the value(s) for fieldId (Id of individual field of the file that correspond to the subject).
* creating it if it does
* not exist. Will not return null.
*
*
* Definition:
* Id of individual field of the file that correspond to the subject
*
*/
public StringDt getFieldId() {
if (myFieldId == null) {
myFieldId = new StringDt();
}
return myFieldId;
}
/**
* Gets the value(s) for fieldId (Id of individual field of the file that correspond to the subject).
* creating it if it does
* not exist. Will not return null.
*
*
* Definition:
* Id of individual field of the file that correspond to the subject
*
*/
public StringDt getFieldIdElement() {
if (myFieldId == null) {
myFieldId = new StringDt();
}
return myFieldId;
}
/**
* Sets the value(s) for fieldId (Id of individual field of the file that correspond to the subject)
*
*
* Definition:
* Id of individual field of the file that correspond to the subject
*
*/
public Subject setFieldId(StringDt theValue) {
myFieldId = theValue;
return this;
}
/**
* Sets the value for fieldId (Id of individual field of the file that correspond to the subject)
*
*
* Definition:
* Id of individual field of the file that correspond to the subject
*
*/
public Subject setFieldId( String theString) {
myFieldId = new StringDt(theString);
return this;
}
}
/**
* Block class for child element: GVFMeta.platform (Sequencing platform)
*
*
* Definition:
* Technology platform used in the sequencing
*
*/
@Block()
public static class Platform
extends BaseIdentifiableElement implements IResourceBlock {
@Child(name="class", type=CodeDt.class, order=0, min=0, max=1, summary=false, modifier=false)
@Description(
shortDefinition="Platform class",
formalDefinition="Class of the sequencing platform"
)
private CodeDt myClassElement;
@Child(name="version", type=StringDt.class, order=1, min=0, max=1, summary=false, modifier=false)
@Description(
shortDefinition="Platform version",
formalDefinition="Version of the platform being used"
)
private StringDt myVersion;
@Child(name="name", type=CodeDt.class, order=2, min=0, max=1, summary=false, modifier=false)
@Description(
shortDefinition="Platform name",
formalDefinition="Name of the platform being used"
)
private CodeDt myName;
@Child(name="identity", type=StringDt.class, order=3, min=0, max=1, summary=false, modifier=false)
@Description(
shortDefinition="Platform id",
formalDefinition="Id of the platfrom being used"
)
private StringDt myIdentity;
@Child(name="readLength", type=IntegerDt.class, order=4, min=0, max=1, summary=false, modifier=false)
@Description(
shortDefinition="Read length",
formalDefinition="Read length of the technology"
)
private IntegerDt myReadLength;
@Child(name="readType", type=CodeDt.class, order=5, min=0, max=1, summary=false, modifier=false)
@Description(
shortDefinition="Read type",
formalDefinition="Read type of the technology"
)
private CodeDt myReadType;
@Child(name="readPairSpan", type=IntegerDt.class, order=6, min=0, max=1, summary=false, modifier=false)
@Description(
shortDefinition="Read pair span",
formalDefinition="Read pair span of the technology"
)
private IntegerDt myReadPairSpan;
@Child(name="averageCoverage", type=IntegerDt.class, order=7, min=0, max=1, summary=false, modifier=false)
@Description(
shortDefinition="Average coverage",
formalDefinition="Average coverage of the technology"
)
private IntegerDt myAverageCoverage;
@Override
public boolean isEmpty() {
return super.isBaseEmpty() && ca.uhn.fhir.util.ElementUtil.isEmpty( myClassElement, myVersion, myName, myIdentity, myReadLength, myReadType, myReadPairSpan, myAverageCoverage);
}
@Override
public List getAllPopulatedChildElementsOfType(Class theType) {
return ca.uhn.fhir.util.ElementUtil.allPopulatedChildElements(theType, myClassElement, myVersion, myName, myIdentity, myReadLength, myReadType, myReadPairSpan, myAverageCoverage);
}
/**
* Gets the value(s) for class (Platform class).
* creating it if it does
* not exist. Will not return null.
*
*
* Definition:
* Class of the sequencing platform
*
*/
public CodeDt getClassElement() {
if (myClassElement == null) {
myClassElement = new CodeDt();
}
return myClassElement;
}
/**
* Gets the value(s) for class (Platform class).
* creating it if it does
* not exist. Will not return null.
*
*
* Definition:
* Class of the sequencing platform
*
*/
public CodeDt getClassElementElement() {
if (myClassElement == null) {
myClassElement = new CodeDt();
}
return myClassElement;
}
/**
* Sets the value(s) for class (Platform class)
*
*
* Definition:
* Class of the sequencing platform
*
*/
public Platform setClassElement(CodeDt theValue) {
myClassElement = theValue;
return this;
}
/**
* Sets the value for class (Platform class)
*
*
* Definition:
* Class of the sequencing platform
*
*/
public Platform setClassElement( String theCode) {
myClassElement = new CodeDt(theCode);
return this;
}
/**
* Gets the value(s) for version (Platform version).
* creating it if it does
* not exist. Will not return null.
*
*
* Definition:
* Version of the platform being used
*
*/
public StringDt getVersion() {
if (myVersion == null) {
myVersion = new StringDt();
}
return myVersion;
}
/**
* Gets the value(s) for version (Platform version).
* creating it if it does
* not exist. Will not return null.
*
*
* Definition:
* Version of the platform being used
*
*/
public StringDt getVersionElement() {
if (myVersion == null) {
myVersion = new StringDt();
}
return myVersion;
}
/**
* Sets the value(s) for version (Platform version)
*
*
* Definition:
* Version of the platform being used
*
*/
public Platform setVersion(StringDt theValue) {
myVersion = theValue;
return this;
}
/**
* Sets the value for version (Platform version)
*
*
* Definition:
* Version of the platform being used
*
*/
public Platform setVersion( String theString) {
myVersion = new StringDt(theString);
return this;
}
/**
* Gets the value(s) for name (Platform name).
* creating it if it does
* not exist. Will not return null.
*
*
* Definition:
* Name of the platform being used
*
*/
public CodeDt getName() {
if (myName == null) {
myName = new CodeDt();
}
return myName;
}
/**
* Gets the value(s) for name (Platform name).
* creating it if it does
* not exist. Will not return null.
*
*
* Definition:
* Name of the platform being used
*
*/
public CodeDt getNameElement() {
if (myName == null) {
myName = new CodeDt();
}
return myName;
}
/**
* Sets the value(s) for name (Platform name)
*
*
* Definition:
* Name of the platform being used
*
*/
public Platform setName(CodeDt theValue) {
myName = theValue;
return this;
}
/**
* Sets the value for name (Platform name)
*
*
* Definition:
* Name of the platform being used
*
*/
public Platform setName( String theCode) {
myName = new CodeDt(theCode);
return this;
}
/**
* Gets the value(s) for identity (Platform id).
* creating it if it does
* not exist. Will not return null.
*
*
* Definition:
* Id of the platfrom being used
*
*/
public StringDt getIdentity() {
if (myIdentity == null) {
myIdentity = new StringDt();
}
return myIdentity;
}
/**
* Gets the value(s) for identity (Platform id).
* creating it if it does
* not exist. Will not return null.
*
*
* Definition:
* Id of the platfrom being used
*
*/
public StringDt getIdentityElement() {
if (myIdentity == null) {
myIdentity = new StringDt();
}
return myIdentity;
}
/**
* Sets the value(s) for identity (Platform id)
*
*
* Definition:
* Id of the platfrom being used
*
*/
public Platform setIdentity(StringDt theValue) {
myIdentity = theValue;
return this;
}
/**
* Sets the value for identity (Platform id)
*
*
* Definition:
* Id of the platfrom being used
*
*/
public Platform setIdentity( String theString) {
myIdentity = new StringDt(theString);
return this;
}
/**
* Gets the value(s) for readLength (Read length).
* creating it if it does
* not exist. Will not return null.
*
*
* Definition:
* Read length of the technology
*
*/
public IntegerDt getReadLength() {
if (myReadLength == null) {
myReadLength = new IntegerDt();
}
return myReadLength;
}
/**
* Gets the value(s) for readLength (Read length).
* creating it if it does
* not exist. Will not return null.
*
*
* Definition:
* Read length of the technology
*
*/
public IntegerDt getReadLengthElement() {
if (myReadLength == null) {
myReadLength = new IntegerDt();
}
return myReadLength;
}
/**
* Sets the value(s) for readLength (Read length)
*
*
* Definition:
* Read length of the technology
*
*/
public Platform setReadLength(IntegerDt theValue) {
myReadLength = theValue;
return this;
}
/**
* Sets the value for readLength (Read length)
*
*
* Definition:
* Read length of the technology
*
*/
public Platform setReadLength( int theInteger) {
myReadLength = new IntegerDt(theInteger);
return this;
}
/**
* Gets the value(s) for readType (Read type).
* creating it if it does
* not exist. Will not return null.
*
*
* Definition:
* Read type of the technology
*
*/
public CodeDt getReadType() {
if (myReadType == null) {
myReadType = new CodeDt();
}
return myReadType;
}
/**
* Gets the value(s) for readType (Read type).
* creating it if it does
* not exist. Will not return null.
*
*
* Definition:
* Read type of the technology
*
*/
public CodeDt getReadTypeElement() {
if (myReadType == null) {
myReadType = new CodeDt();
}
return myReadType;
}
/**
* Sets the value(s) for readType (Read type)
*
*
* Definition:
* Read type of the technology
*
*/
public Platform setReadType(CodeDt theValue) {
myReadType = theValue;
return this;
}
/**
* Sets the value for readType (Read type)
*
*
* Definition:
* Read type of the technology
*
*/
public Platform setReadType( String theCode) {
myReadType = new CodeDt(theCode);
return this;
}
/**
* Gets the value(s) for readPairSpan (Read pair span).
* creating it if it does
* not exist. Will not return null.
*
*
* Definition:
* Read pair span of the technology
*
*/
public IntegerDt getReadPairSpan() {
if (myReadPairSpan == null) {
myReadPairSpan = new IntegerDt();
}
return myReadPairSpan;
}
/**
* Gets the value(s) for readPairSpan (Read pair span).
* creating it if it does
* not exist. Will not return null.
*
*
* Definition:
* Read pair span of the technology
*
*/
public IntegerDt getReadPairSpanElement() {
if (myReadPairSpan == null) {
myReadPairSpan = new IntegerDt();
}
return myReadPairSpan;
}
/**
* Sets the value(s) for readPairSpan (Read pair span)
*
*
* Definition:
* Read pair span of the technology
*
*/
public Platform setReadPairSpan(IntegerDt theValue) {
myReadPairSpan = theValue;
return this;
}
/**
* Sets the value for readPairSpan (Read pair span)
*
*
* Definition:
* Read pair span of the technology
*
*/
public Platform setReadPairSpan( int theInteger) {
myReadPairSpan = new IntegerDt(theInteger);
return this;
}
/**
* Gets the value(s) for averageCoverage (Average coverage).
* creating it if it does
* not exist. Will not return null.
*
*
* Definition:
* Average coverage of the technology
*
*/
public IntegerDt getAverageCoverage() {
if (myAverageCoverage == null) {
myAverageCoverage = new IntegerDt();
}
return myAverageCoverage;
}
/**
* Gets the value(s) for averageCoverage (Average coverage).
* creating it if it does
* not exist. Will not return null.
*
*
* Definition:
* Average coverage of the technology
*
*/
public IntegerDt getAverageCoverageElement() {
if (myAverageCoverage == null) {
myAverageCoverage = new IntegerDt();
}
return myAverageCoverage;
}
/**
* Sets the value(s) for averageCoverage (Average coverage)
*
*
* Definition:
* Average coverage of the technology
*
*/
public Platform setAverageCoverage(IntegerDt theValue) {
myAverageCoverage = theValue;
return this;
}
/**
* Sets the value for averageCoverage (Average coverage)
*
*
* Definition:
* Average coverage of the technology
*
*/
public Platform setAverageCoverage( int theInteger) {
myAverageCoverage = new IntegerDt(theInteger);
return this;
}
}
@Override
public String getResourceName() {
return "GVFMeta";
}
public ca.uhn.fhir.context.FhirVersionEnum getStructureFhirVersionEnum() {
return ca.uhn.fhir.context.FhirVersionEnum.DSTU1;
}
}
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