ca.uhn.fhir.model.dstu.resource.SequencingAnalysis Maven / Gradle / Ivy
package ca.uhn.fhir.model.dstu.resource;
import java.util.*;
import ca.uhn.fhir.model.api.*;
import ca.uhn.fhir.model.api.annotation.*;
import ca.uhn.fhir.rest.gclient.*;
import ca.uhn.fhir.model.dstu.composite.AddressDt;
import ca.uhn.fhir.model.dstu.valueset.AdministrativeGenderCodesEnum;
import ca.uhn.fhir.model.dstu.valueset.AdmitSourceEnum;
import ca.uhn.fhir.model.dstu.resource.AdverseReaction;
import ca.uhn.fhir.model.dstu.valueset.AggregationModeEnum;
import ca.uhn.fhir.model.dstu.valueset.AlertStatusEnum;
import ca.uhn.fhir.model.dstu.resource.AllergyIntolerance;
import ca.uhn.fhir.model.dstu.valueset.AnimalSpeciesEnum;
import ca.uhn.fhir.model.dstu.resource.Appointment;
import ca.uhn.fhir.model.dstu.composite.AttachmentDt;
import ca.uhn.fhir.model.dstu.resource.Availability;
import ca.uhn.fhir.model.dstu.valueset.BindingConformanceEnum;
import ca.uhn.fhir.model.dstu.resource.CarePlan;
import ca.uhn.fhir.model.dstu.valueset.CarePlanActivityCategoryEnum;
import ca.uhn.fhir.model.dstu.valueset.CarePlanActivityStatusEnum;
import ca.uhn.fhir.model.dstu.valueset.CarePlanGoalStatusEnum;
import ca.uhn.fhir.model.dstu.valueset.CarePlanStatusEnum;
import ca.uhn.fhir.model.dstu.valueset.CausalityExpectationEnum;
import ca.uhn.fhir.model.dstu.composite.CodeableConceptDt;
import ca.uhn.fhir.model.dstu.composite.CodingDt;
import ca.uhn.fhir.model.dstu.valueset.CompositionAttestationModeEnum;
import ca.uhn.fhir.model.dstu.valueset.CompositionStatusEnum;
import ca.uhn.fhir.model.dstu.valueset.ConceptMapEquivalenceEnum;
import ca.uhn.fhir.model.dstu.resource.Condition;
import ca.uhn.fhir.model.dstu.valueset.ConditionRelationshipTypeEnum;
import ca.uhn.fhir.model.dstu.valueset.ConditionStatusEnum;
import ca.uhn.fhir.model.dstu.valueset.ConformanceEventModeEnum;
import ca.uhn.fhir.model.dstu.valueset.ConformanceStatementStatusEnum;
import ca.uhn.fhir.model.dstu.valueset.ConstraintSeverityEnum;
import ca.uhn.fhir.model.dstu.composite.ContactDt;
import ca.uhn.fhir.model.dstu.valueset.ContactUseEnum;
import ca.uhn.fhir.model.dstu.valueset.CriticalityEnum;
import ca.uhn.fhir.model.dstu.valueset.DataTypeEnum;
import ca.uhn.fhir.model.dstu.resource.Device;
import ca.uhn.fhir.model.dstu.resource.DeviceObservationReport;
import ca.uhn.fhir.model.dstu.resource.DiagnosticOrder;
import ca.uhn.fhir.model.dstu.valueset.DiagnosticOrderPriorityEnum;
import ca.uhn.fhir.model.dstu.valueset.DiagnosticOrderStatusEnum;
import ca.uhn.fhir.model.dstu.resource.DiagnosticReport;
import ca.uhn.fhir.model.dstu.valueset.DiagnosticReportStatusEnum;
import ca.uhn.fhir.model.dstu.resource.DocumentManifest;
import ca.uhn.fhir.model.dstu.valueset.DocumentModeEnum;
import ca.uhn.fhir.model.dstu.resource.DocumentReference;
import ca.uhn.fhir.model.dstu.valueset.DocumentReferenceStatusEnum;
import ca.uhn.fhir.model.dstu.valueset.DocumentRelationshipTypeEnum;
import ca.uhn.fhir.model.dstu.resource.Encounter;
import ca.uhn.fhir.model.dstu.valueset.EncounterClassEnum;
import ca.uhn.fhir.model.dstu.valueset.EncounterStateEnum;
import ca.uhn.fhir.model.dstu.valueset.EncounterTypeEnum;
import ca.uhn.fhir.model.dstu.valueset.ExposureTypeEnum;
import ca.uhn.fhir.model.dstu.valueset.ExtensionContextEnum;
import ca.uhn.fhir.model.dstu.valueset.FHIRDefinedTypeEnum;
import ca.uhn.fhir.model.dstu.resource.FamilyHistory;
import ca.uhn.fhir.model.dstu.valueset.FilterOperatorEnum;
import ca.uhn.fhir.model.dstu.resource.GVFMeta;
import ca.uhn.fhir.model.dstu.resource.Group;
import ca.uhn.fhir.model.dstu.valueset.GroupTypeEnum;
import ca.uhn.fhir.model.dstu.valueset.HierarchicalRelationshipTypeEnum;
import ca.uhn.fhir.model.dstu.composite.HumanNameDt;
import ca.uhn.fhir.model.dstu.composite.IdentifierDt;
import ca.uhn.fhir.model.dstu.valueset.IdentifierUseEnum;
import ca.uhn.fhir.model.dstu.valueset.ImagingModalityEnum;
import ca.uhn.fhir.model.dstu.resource.ImagingStudy;
import ca.uhn.fhir.model.dstu.resource.Immunization;
import ca.uhn.fhir.model.dstu.valueset.ImmunizationReasonCodesEnum;
import ca.uhn.fhir.model.dstu.resource.ImmunizationRecommendation;
import ca.uhn.fhir.model.dstu.valueset.ImmunizationRecommendationDateCriterionCodesEnum;
import ca.uhn.fhir.model.dstu.valueset.ImmunizationRecommendationStatusCodesEnum;
import ca.uhn.fhir.model.dstu.valueset.ImmunizationRouteCodesEnum;
import ca.uhn.fhir.model.dstu.valueset.InstanceAvailabilityEnum;
import ca.uhn.fhir.model.dstu.valueset.IssueSeverityEnum;
import ca.uhn.fhir.model.dstu.valueset.IssueTypeEnum;
import ca.uhn.fhir.model.dstu.valueset.LinkTypeEnum;
import ca.uhn.fhir.model.dstu.valueset.ListModeEnum;
import ca.uhn.fhir.model.dstu.resource.Location;
import ca.uhn.fhir.model.dstu.valueset.LocationModeEnum;
import ca.uhn.fhir.model.dstu.valueset.LocationStatusEnum;
import ca.uhn.fhir.model.dstu.valueset.LocationTypeEnum;
import ca.uhn.fhir.model.dstu.valueset.MaritalStatusCodesEnum;
import ca.uhn.fhir.model.dstu.resource.Media;
import ca.uhn.fhir.model.dstu.valueset.MediaTypeEnum;
import ca.uhn.fhir.model.dstu.resource.Medication;
import ca.uhn.fhir.model.dstu.resource.MedicationAdministration;
import ca.uhn.fhir.model.dstu.valueset.MedicationAdministrationStatusEnum;
import ca.uhn.fhir.model.dstu.resource.MedicationDispense;
import ca.uhn.fhir.model.dstu.valueset.MedicationDispenseStatusEnum;
import ca.uhn.fhir.model.dstu.valueset.MedicationKindEnum;
import ca.uhn.fhir.model.dstu.resource.MedicationPrescription;
import ca.uhn.fhir.model.dstu.valueset.MedicationPrescriptionStatusEnum;
import ca.uhn.fhir.model.dstu.resource.MedicationStatement;
import ca.uhn.fhir.model.dstu.valueset.MessageEventEnum;
import ca.uhn.fhir.model.dstu.valueset.MessageSignificanceCategoryEnum;
import ca.uhn.fhir.model.dstu.valueset.MessageTransportEnum;
import ca.uhn.fhir.model.dstu.resource.Microarray;
import ca.uhn.fhir.model.dstu.valueset.ModalityEnum;
import ca.uhn.fhir.model.dstu.resource.Observation;
import ca.uhn.fhir.model.dstu.valueset.ObservationRelationshipTypeEnum;
import ca.uhn.fhir.model.dstu.valueset.ObservationReliabilityEnum;
import ca.uhn.fhir.model.dstu.valueset.ObservationStatusEnum;
import ca.uhn.fhir.model.dstu.resource.OperationOutcome;
import ca.uhn.fhir.model.dstu.resource.Order;
import ca.uhn.fhir.model.dstu.valueset.OrderOutcomeStatusEnum;
import ca.uhn.fhir.model.dstu.resource.Organization;
import ca.uhn.fhir.model.dstu.valueset.OrganizationTypeEnum;
import ca.uhn.fhir.model.dstu.valueset.ParticipantTypeEnum;
import ca.uhn.fhir.model.dstu.resource.Patient;
import ca.uhn.fhir.model.dstu.composite.PeriodDt;
import ca.uhn.fhir.model.dstu.resource.Practitioner;
import ca.uhn.fhir.model.dstu.valueset.PractitionerRoleEnum;
import ca.uhn.fhir.model.dstu.valueset.PractitionerSpecialtyEnum;
import ca.uhn.fhir.model.dstu.resource.Procedure;
import ca.uhn.fhir.model.dstu.valueset.ProcedureRelationshipTypeEnum;
import ca.uhn.fhir.model.dstu.resource.Profile;
import ca.uhn.fhir.model.dstu.valueset.PropertyRepresentationEnum;
import ca.uhn.fhir.model.dstu.valueset.ProvenanceEntityRoleEnum;
import ca.uhn.fhir.model.dstu.valueset.QuantityCompararatorEnum;
import ca.uhn.fhir.model.dstu.composite.QuantityDt;
import ca.uhn.fhir.model.dstu.valueset.QueryOutcomeEnum;
import ca.uhn.fhir.model.dstu.valueset.QuestionnaireGroupNameEnum;
import ca.uhn.fhir.model.dstu.valueset.QuestionnaireNameEnum;
import ca.uhn.fhir.model.dstu.valueset.QuestionnaireStatusEnum;
import ca.uhn.fhir.model.dstu.composite.RangeDt;
import ca.uhn.fhir.model.dstu.composite.RatioDt;
import ca.uhn.fhir.model.dstu.valueset.ReactionSeverityEnum;
import ca.uhn.fhir.model.dstu.resource.RelatedPerson;
import ca.uhn.fhir.model.dstu.valueset.ResourceProfileStatusEnum;
import ca.uhn.fhir.model.dstu.valueset.ResourceTypeEnum;
import ca.uhn.fhir.model.dstu.valueset.ResponseTypeEnum;
import ca.uhn.fhir.model.dstu.valueset.RestfulConformanceModeEnum;
import ca.uhn.fhir.model.dstu.valueset.RestfulOperationSystemEnum;
import ca.uhn.fhir.model.dstu.valueset.RestfulOperationTypeEnum;
import ca.uhn.fhir.model.dstu.valueset.RestfulSecurityServiceEnum;
import ca.uhn.fhir.model.dstu.composite.SampledDataDt;
import ca.uhn.fhir.model.dstu.composite.ScheduleDt;
import ca.uhn.fhir.model.dstu.valueset.SearchParamTypeEnum;
import ca.uhn.fhir.model.dstu.valueset.SecurityEventActionEnum;
import ca.uhn.fhir.model.dstu.valueset.SecurityEventObjectLifecycleEnum;
import ca.uhn.fhir.model.dstu.valueset.SecurityEventObjectRoleEnum;
import ca.uhn.fhir.model.dstu.valueset.SecurityEventObjectTypeEnum;
import ca.uhn.fhir.model.dstu.valueset.SecurityEventOutcomeEnum;
import ca.uhn.fhir.model.dstu.valueset.SecurityEventParticipantNetworkTypeEnum;
import ca.uhn.fhir.model.dstu.valueset.SecurityEventSourceTypeEnum;
import ca.uhn.fhir.model.dstu.valueset.SensitivityStatusEnum;
import ca.uhn.fhir.model.dstu.valueset.SensitivityTypeEnum;
import ca.uhn.fhir.model.dstu.resource.SequencingAnalysis;
import ca.uhn.fhir.model.dstu.resource.SequencingLab;
import ca.uhn.fhir.model.dstu.valueset.SlicingRulesEnum;
import ca.uhn.fhir.model.dstu.resource.Slot;
import ca.uhn.fhir.model.dstu.resource.Specimen;
import ca.uhn.fhir.model.dstu.valueset.SpecimenCollectionMethodEnum;
import ca.uhn.fhir.model.dstu.resource.Substance;
import ca.uhn.fhir.model.dstu.valueset.SupplyDispenseStatusEnum;
import ca.uhn.fhir.model.dstu.valueset.SupplyItemTypeEnum;
import ca.uhn.fhir.model.dstu.valueset.SupplyStatusEnum;
import ca.uhn.fhir.model.dstu.valueset.SupplyTypeEnum;
import ca.uhn.fhir.model.api.TemporalPrecisionEnum;
import ca.uhn.fhir.model.dstu.resource.ValueSet;
import ca.uhn.fhir.model.dstu.valueset.ValueSetStatusEnum;
import ca.uhn.fhir.model.api.ExtensionDt;
import ca.uhn.fhir.model.api.IResource;
import ca.uhn.fhir.model.dstu.composite.AgeDt;
import ca.uhn.fhir.model.dstu.composite.DurationDt;
import ca.uhn.fhir.model.dstu.composite.ResourceReferenceDt;
import ca.uhn.fhir.model.dstu.resource.Binary;
import ca.uhn.fhir.model.primitive.Base64BinaryDt;
import ca.uhn.fhir.model.primitive.BooleanDt;
import ca.uhn.fhir.model.primitive.BoundCodeDt;
import ca.uhn.fhir.model.primitive.BoundCodeableConceptDt;
import ca.uhn.fhir.model.primitive.CodeDt;
import ca.uhn.fhir.model.primitive.DateDt;
import ca.uhn.fhir.model.primitive.DateTimeDt;
import ca.uhn.fhir.model.primitive.DecimalDt;
import ca.uhn.fhir.model.primitive.IdDt;
import ca.uhn.fhir.model.primitive.IdrefDt;
import ca.uhn.fhir.model.primitive.InstantDt;
import ca.uhn.fhir.model.primitive.IntegerDt;
import ca.uhn.fhir.model.primitive.OidDt;
import ca.uhn.fhir.model.primitive.StringDt;
import ca.uhn.fhir.model.primitive.UriDt;
/**
* HAPI/FHIR SequencingAnalysis Resource
* (Sequencing Analysis)
*
*
* Definition:
* Computational analysis on a patient's genetic raw file
*
*
*
* Requirements:
*
*
*
*
* Profile Definition:
* http://hl7.org/fhir/profiles/SequencingAnalysis
*
*
*/
@ResourceDef(name="SequencingAnalysis", profile="http://hl7.org/fhir/profiles/SequencingAnalysis", id="sequencinganalysis")
public class SequencingAnalysis extends ca.uhn.fhir.model.dstu.resource.BaseResource
implements IResource {
/**
* Search parameter constant for subject
*
* Description: Subject of the analysis
* Type: reference
* Path: SequencingAnalysis.subject
*
*/
@SearchParamDefinition(name="subject", path="SequencingAnalysis.subject", description="Subject of the analysis", type="reference" )
public static final String SP_SUBJECT = "subject";
/**
* Fluent Client search parameter constant for subject
*
* Description: Subject of the analysis
* Type: reference
* Path: SequencingAnalysis.subject
*
*/
public static final ReferenceClientParam SUBJECT = new ReferenceClientParam(SP_SUBJECT);
/**
* Constant for fluent queries to be used to add include statements. Specifies
* the path value of "SequencingAnalysis.subject".
*/
public static final Include INCLUDE_SUBJECT = new Include("SequencingAnalysis.subject");
/**
* Search parameter constant for date
*
* Description: Date when result of the analysis is updated
* Type: date
* Path: SequencingAnalysis.date
*
*/
@SearchParamDefinition(name="date", path="SequencingAnalysis.date", description="Date when result of the analysis is updated", type="date" )
public static final String SP_DATE = "date";
/**
* Fluent Client search parameter constant for date
*
* Description: Date when result of the analysis is updated
* Type: date
* Path: SequencingAnalysis.date
*
*/
public static final DateClientParam DATE = new DateClientParam(SP_DATE);
/**
* Search parameter constant for genome
*
* Description: Name of the reference genome used in the analysis
* Type: string
* Path: SequencingAnalysis.genome.name
*
*/
@SearchParamDefinition(name="genome", path="SequencingAnalysis.genome.name", description="Name of the reference genome used in the analysis", type="string" )
public static final String SP_GENOME = "genome";
/**
* Fluent Client search parameter constant for genome
*
* Description: Name of the reference genome used in the analysis
* Type: string
* Path: SequencingAnalysis.genome.name
*
*/
public static final StringClientParam GENOME = new StringClientParam(SP_GENOME);
@Child(name="subject", order=0, min=0, max=1, summary=false, modifier=false, type={
ca.uhn.fhir.model.dstu.resource.Patient.class })
@Description(
shortDefinition="Subject",
formalDefinition="Subject of the analysis"
)
private ResourceReferenceDt mySubject;
@Child(name="date", type=DateDt.class, order=1, min=1, max=1, summary=false, modifier=false)
@Description(
shortDefinition="Date",
formalDefinition="Date when result of the analysis is updated"
)
private DateDt myDate;
@Child(name="name", type=StringDt.class, order=2, min=1, max=1, summary=false, modifier=false)
@Description(
shortDefinition="Name",
formalDefinition="Name of the analysis"
)
private StringDt myName;
@Child(name="genome", order=3, min=1, max=1, summary=false, modifier=false)
@Description(
shortDefinition="Reference genome",
formalDefinition="Reference genome used in the analysis"
)
private Genome myGenome;
@Child(name="file", type=AttachmentDt.class, order=4, min=0, max=Child.MAX_UNLIMITED, summary=false, modifier=false)
@Description(
shortDefinition="File",
formalDefinition="Files uploaded as result of the analysis"
)
private java.util.List myFile;
@Child(name="inputLab", order=5, min=0, max=Child.MAX_UNLIMITED, summary=false, modifier=false, type={
ca.uhn.fhir.model.dstu.resource.SequencingLab.class })
@Description(
shortDefinition="Input lab",
formalDefinition="SequencingLab taken into account of the analysis"
)
private java.util.List myInputLab;
@Child(name="inputAnalysis", order=6, min=0, max=Child.MAX_UNLIMITED, summary=false, modifier=false, type={
ca.uhn.fhir.model.dstu.resource.SequencingAnalysis.class })
@Description(
shortDefinition="Input analysis",
formalDefinition="SequencingAnalysis taken into account of the analysis"
)
private java.util.List myInputAnalysis;
@Override
public boolean isEmpty() {
return super.isBaseEmpty() && ca.uhn.fhir.util.ElementUtil.isEmpty( mySubject, myDate, myName, myGenome, myFile, myInputLab, myInputAnalysis);
}
@Override
public List getAllPopulatedChildElementsOfType(Class theType) {
return ca.uhn.fhir.util.ElementUtil.allPopulatedChildElements(theType, mySubject, myDate, myName, myGenome, myFile, myInputLab, myInputAnalysis);
}
/**
* Gets the value(s) for subject (Subject).
* creating it if it does
* not exist. Will not return null.
*
*
* Definition:
* Subject of the analysis
*
*/
public ResourceReferenceDt getSubject() {
if (mySubject == null) {
mySubject = new ResourceReferenceDt();
}
return mySubject;
}
/**
* Gets the value(s) for subject (Subject).
* creating it if it does
* not exist. Will not return null.
*
*
* Definition:
* Subject of the analysis
*
*/
public ResourceReferenceDt getSubjectElement() {
if (mySubject == null) {
mySubject = new ResourceReferenceDt();
}
return mySubject;
}
/**
* Sets the value(s) for subject (Subject)
*
*
* Definition:
* Subject of the analysis
*
*/
public SequencingAnalysis setSubject(ResourceReferenceDt theValue) {
mySubject = theValue;
return this;
}
/**
* Gets the value(s) for date (Date).
* creating it if it does
* not exist. Will not return null.
*
*
* Definition:
* Date when result of the analysis is updated
*
*/
public DateDt getDate() {
if (myDate == null) {
myDate = new DateDt();
}
return myDate;
}
/**
* Gets the value(s) for date (Date).
* creating it if it does
* not exist. Will not return null.
*
*
* Definition:
* Date when result of the analysis is updated
*
*/
public DateDt getDateElement() {
if (myDate == null) {
myDate = new DateDt();
}
return myDate;
}
/**
* Sets the value(s) for date (Date)
*
*
* Definition:
* Date when result of the analysis is updated
*
*/
public SequencingAnalysis setDate(DateDt theValue) {
myDate = theValue;
return this;
}
/**
* Sets the value for date (Date)
*
*
* Definition:
* Date when result of the analysis is updated
*
*/
public SequencingAnalysis setDate( Date theDate, TemporalPrecisionEnum thePrecision) {
myDate = new DateDt(theDate, thePrecision);
return this;
}
/**
* Sets the value for date (Date)
*
*
* Definition:
* Date when result of the analysis is updated
*
*/
public SequencingAnalysis setDateWithDayPrecision( Date theDate) {
myDate = new DateDt(theDate);
return this;
}
/**
* Gets the value(s) for name (Name).
* creating it if it does
* not exist. Will not return null.
*
*
* Definition:
* Name of the analysis
*
*/
public StringDt getName() {
if (myName == null) {
myName = new StringDt();
}
return myName;
}
/**
* Gets the value(s) for name (Name).
* creating it if it does
* not exist. Will not return null.
*
*
* Definition:
* Name of the analysis
*
*/
public StringDt getNameElement() {
if (myName == null) {
myName = new StringDt();
}
return myName;
}
/**
* Sets the value(s) for name (Name)
*
*
* Definition:
* Name of the analysis
*
*/
public SequencingAnalysis setName(StringDt theValue) {
myName = theValue;
return this;
}
/**
* Sets the value for name (Name)
*
*
* Definition:
* Name of the analysis
*
*/
public SequencingAnalysis setName( String theString) {
myName = new StringDt(theString);
return this;
}
/**
* Gets the value(s) for genome (Reference genome).
* creating it if it does
* not exist. Will not return null.
*
*
* Definition:
* Reference genome used in the analysis
*
*/
public Genome getGenome() {
if (myGenome == null) {
myGenome = new Genome();
}
return myGenome;
}
/**
* Gets the value(s) for genome (Reference genome).
* creating it if it does
* not exist. Will not return null.
*
*
* Definition:
* Reference genome used in the analysis
*
*/
public Genome getGenomeElement() {
if (myGenome == null) {
myGenome = new Genome();
}
return myGenome;
}
/**
* Sets the value(s) for genome (Reference genome)
*
*
* Definition:
* Reference genome used in the analysis
*
*/
public SequencingAnalysis setGenome(Genome theValue) {
myGenome = theValue;
return this;
}
/**
* Gets the value(s) for file (File).
* creating it if it does
* not exist. Will not return null.
*
*
* Definition:
* Files uploaded as result of the analysis
*
*/
public java.util.List getFile() {
if (myFile == null) {
myFile = new java.util.ArrayList();
}
return myFile;
}
/**
* Gets the value(s) for file (File).
* creating it if it does
* not exist. Will not return null.
*
*
* Definition:
* Files uploaded as result of the analysis
*
*/
public java.util.List getFileElement() {
if (myFile == null) {
myFile = new java.util.ArrayList();
}
return myFile;
}
/**
* Sets the value(s) for file (File)
*
*
* Definition:
* Files uploaded as result of the analysis
*
*/
public SequencingAnalysis setFile(java.util.List theValue) {
myFile = theValue;
return this;
}
/**
* Adds and returns a new value for file (File)
*
*
* Definition:
* Files uploaded as result of the analysis
*
*/
public AttachmentDt addFile() {
AttachmentDt newType = new AttachmentDt();
getFile().add(newType);
return newType;
}
/**
* Gets the first repetition for file (File),
* creating it if it does not already exist.
*
*
* Definition:
* Files uploaded as result of the analysis
*
*/
public AttachmentDt getFileFirstRep() {
if (getFile().isEmpty()) {
return addFile();
}
return getFile().get(0);
}
/**
* Gets the value(s) for inputLab (Input lab).
* creating it if it does
* not exist. Will not return null.
*
*
* Definition:
* SequencingLab taken into account of the analysis
*
*/
public java.util.List getInputLab() {
if (myInputLab == null) {
myInputLab = new java.util.ArrayList();
}
return myInputLab;
}
/**
* Gets the value(s) for inputLab (Input lab).
* creating it if it does
* not exist. Will not return null.
*
*
* Definition:
* SequencingLab taken into account of the analysis
*
*/
public java.util.List getInputLabElement() {
if (myInputLab == null) {
myInputLab = new java.util.ArrayList();
}
return myInputLab;
}
/**
* Sets the value(s) for inputLab (Input lab)
*
*
* Definition:
* SequencingLab taken into account of the analysis
*
*/
public SequencingAnalysis setInputLab(java.util.List theValue) {
myInputLab = theValue;
return this;
}
/**
* Adds and returns a new value for inputLab (Input lab)
*
*
* Definition:
* SequencingLab taken into account of the analysis
*
*/
public ResourceReferenceDt addInputLab() {
ResourceReferenceDt newType = new ResourceReferenceDt();
getInputLab().add(newType);
return newType;
}
/**
* Gets the value(s) for inputAnalysis (Input analysis).
* creating it if it does
* not exist. Will not return null.
*
*
* Definition:
* SequencingAnalysis taken into account of the analysis
*
*/
public java.util.List getInputAnalysis() {
if (myInputAnalysis == null) {
myInputAnalysis = new java.util.ArrayList();
}
return myInputAnalysis;
}
/**
* Gets the value(s) for inputAnalysis (Input analysis).
* creating it if it does
* not exist. Will not return null.
*
*
* Definition:
* SequencingAnalysis taken into account of the analysis
*
*/
public java.util.List getInputAnalysisElement() {
if (myInputAnalysis == null) {
myInputAnalysis = new java.util.ArrayList();
}
return myInputAnalysis;
}
/**
* Sets the value(s) for inputAnalysis (Input analysis)
*
*
* Definition:
* SequencingAnalysis taken into account of the analysis
*
*/
public SequencingAnalysis setInputAnalysis(java.util.List theValue) {
myInputAnalysis = theValue;
return this;
}
/**
* Adds and returns a new value for inputAnalysis (Input analysis)
*
*
* Definition:
* SequencingAnalysis taken into account of the analysis
*
*/
public ResourceReferenceDt addInputAnalysis() {
ResourceReferenceDt newType = new ResourceReferenceDt();
getInputAnalysis().add(newType);
return newType;
}
/**
* Block class for child element: SequencingAnalysis.genome (Reference genome)
*
*
* Definition:
* Reference genome used in the analysis
*
*/
@Block()
public static class Genome
extends BaseIdentifiableElement implements IResourceBlock {
@Child(name="name", type=CodeDt.class, order=0, min=1, max=1, summary=false, modifier=false)
@Description(
shortDefinition="Name",
formalDefinition="Name of the reference genome"
)
private CodeDt myName;
@Child(name="build", type=StringDt.class, order=1, min=1, max=1, summary=false, modifier=false)
@Description(
shortDefinition="Build",
formalDefinition="Build number of the refernece genome"
)
private StringDt myBuild;
@Override
public boolean isEmpty() {
return super.isBaseEmpty() && ca.uhn.fhir.util.ElementUtil.isEmpty( myName, myBuild);
}
@Override
public List getAllPopulatedChildElementsOfType(Class theType) {
return ca.uhn.fhir.util.ElementUtil.allPopulatedChildElements(theType, myName, myBuild);
}
/**
* Gets the value(s) for name (Name).
* creating it if it does
* not exist. Will not return null.
*
*
* Definition:
* Name of the reference genome
*
*/
public CodeDt getName() {
if (myName == null) {
myName = new CodeDt();
}
return myName;
}
/**
* Gets the value(s) for name (Name).
* creating it if it does
* not exist. Will not return null.
*
*
* Definition:
* Name of the reference genome
*
*/
public CodeDt getNameElement() {
if (myName == null) {
myName = new CodeDt();
}
return myName;
}
/**
* Sets the value(s) for name (Name)
*
*
* Definition:
* Name of the reference genome
*
*/
public Genome setName(CodeDt theValue) {
myName = theValue;
return this;
}
/**
* Sets the value for name (Name)
*
*
* Definition:
* Name of the reference genome
*
*/
public Genome setName( String theCode) {
myName = new CodeDt(theCode);
return this;
}
/**
* Gets the value(s) for build (Build).
* creating it if it does
* not exist. Will not return null.
*
*
* Definition:
* Build number of the refernece genome
*
*/
public StringDt getBuild() {
if (myBuild == null) {
myBuild = new StringDt();
}
return myBuild;
}
/**
* Gets the value(s) for build (Build).
* creating it if it does
* not exist. Will not return null.
*
*
* Definition:
* Build number of the refernece genome
*
*/
public StringDt getBuildElement() {
if (myBuild == null) {
myBuild = new StringDt();
}
return myBuild;
}
/**
* Sets the value(s) for build (Build)
*
*
* Definition:
* Build number of the refernece genome
*
*/
public Genome setBuild(StringDt theValue) {
myBuild = theValue;
return this;
}
/**
* Sets the value for build (Build)
*
*
* Definition:
* Build number of the refernece genome
*
*/
public Genome setBuild( String theString) {
myBuild = new StringDt(theString);
return this;
}
}
@Override
public String getResourceName() {
return "SequencingAnalysis";
}
public ca.uhn.fhir.context.FhirVersionEnum getStructureFhirVersionEnum() {
return ca.uhn.fhir.context.FhirVersionEnum.DSTU1;
}
}
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