org.hl7.fhir.r4b.renderers.ConceptMapRenderer Maven / Gradle / Ivy
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package org.hl7.fhir.r4b.renderers;
import java.io.IOException;
import java.util.HashMap;
import java.util.HashSet;
import java.util.List;
import java.util.Map;
import org.hl7.fhir.exceptions.DefinitionException;
import org.hl7.fhir.exceptions.FHIRFormatError;
import org.hl7.fhir.r4b.model.CodeSystem;
import org.hl7.fhir.r4b.model.ConceptMap;
import org.hl7.fhir.r4b.model.ConceptMap.ConceptMapEquivalence;
import org.hl7.fhir.r4b.model.ConceptMap.ConceptMapGroupComponent;
import org.hl7.fhir.r4b.model.ConceptMap.OtherElementComponent;
import org.hl7.fhir.r4b.model.ConceptMap.SourceElementComponent;
import org.hl7.fhir.r4b.model.ConceptMap.TargetElementComponent;
import org.hl7.fhir.r4b.model.ContactDetail;
import org.hl7.fhir.r4b.model.ContactPoint;
import org.hl7.fhir.r4b.model.DomainResource;
import org.hl7.fhir.r4b.model.Resource;
import org.hl7.fhir.r4b.renderers.utils.RenderingContext;
import org.hl7.fhir.r4b.renderers.utils.Resolver.ResourceContext;
import org.hl7.fhir.r4b.utils.ToolingExtensions;
import org.hl7.fhir.utilities.Utilities;
import org.hl7.fhir.utilities.xhtml.XhtmlNode;
/**
* Rendering framework:
*
* See R5 rendering framework to render R4B resources
*
*/
@Deprecated
public class ConceptMapRenderer extends TerminologyRenderer {
public ConceptMapRenderer(RenderingContext context) {
super(context);
}
public ConceptMapRenderer(RenderingContext context, ResourceContext rcontext) {
super(context, rcontext);
}
public boolean render(XhtmlNode x, Resource dr) throws FHIRFormatError, DefinitionException, IOException {
return render(x, (ConceptMap) dr);
}
public boolean render(XhtmlNode x, ConceptMap cm) throws FHIRFormatError, DefinitionException, IOException {
x.h2().addText(cm.getName() + " (" + cm.getUrl() + ")");
XhtmlNode p = x.para();
p.tx("Mapping from ");
if (cm.hasSource())
AddVsRef(cm.getSource().primitiveValue(), p);
else
p.tx("(not specified)");
p.tx(" to ");
if (cm.hasTarget())
AddVsRef(cm.getTarget().primitiveValue(), p);
else
p.tx("(not specified)");
p = x.para();
if (cm.getExperimental())
p.addText(Utilities.capitalize(cm.getStatus().toString()) + " (not intended for production usage). ");
else
p.addText(Utilities.capitalize(cm.getStatus().toString()) + ". ");
p.tx("Published on " + (cm.hasDate() ? display(cm.getDateElement()) : "?ngen-10?") + " by " + cm.getPublisher());
if (!cm.getContact().isEmpty()) {
p.tx(" (");
boolean firsti = true;
for (ContactDetail ci : cm.getContact()) {
if (firsti)
firsti = false;
else
p.tx(", ");
if (ci.hasName())
p.addText(ci.getName() + ": ");
boolean first = true;
for (ContactPoint c : ci.getTelecom()) {
if (first)
first = false;
else
p.tx(", ");
addTelecom(p, c);
}
}
p.tx(")");
}
p.tx(". ");
p.addText(cm.getCopyright());
if (!Utilities.noString(cm.getDescription()))
addMarkdown(x, cm.getDescription());
x.br();
CodeSystem cs = getContext().getWorker().fetchCodeSystem("http://hl7.org/fhir/concept-map-relationship");
if (cs == null)
cs = getContext().getWorker().fetchCodeSystem("http://hl7.org/fhir/concept-map-equivalence");
String eqpath = cs == null ? null : cs.getUserString("path");
for (ConceptMapGroupComponent grp : cm.getGroup()) {
String src = grp.getSource();
boolean comment = false;
boolean ok = true;
Map> sources = new HashMap>();
Map> targets = new HashMap>();
sources.put("code", new HashSet());
targets.put("code", new HashSet());
SourceElementComponent cc = grp.getElement().get(0);
String dst = grp.getTarget();
sources.get("code").add(grp.getSource());
targets.get("code").add(grp.getTarget());
for (SourceElementComponent ccl : grp.getElement()) {
ok = ok && ccl.getTarget().size() == 1 && ccl.getTarget().get(0).getDependsOn().isEmpty()
&& ccl.getTarget().get(0).getProduct().isEmpty();
for (TargetElementComponent ccm : ccl.getTarget()) {
comment = comment || !Utilities.noString(ccm.getComment());
for (OtherElementComponent d : ccm.getDependsOn()) {
if (!sources.containsKey(d.getProperty()))
sources.put(d.getProperty(), new HashSet());
sources.get(d.getProperty()).add(d.getSystem());
}
for (OtherElementComponent d : ccm.getProduct()) {
if (!targets.containsKey(d.getProperty()))
targets.put(d.getProperty(), new HashSet());
targets.get(d.getProperty()).add(d.getSystem());
}
}
}
String display;
if (ok) {
// simple
XhtmlNode tbl = x.table("grid");
XhtmlNode tr = tbl.tr();
tr.td().b().tx("Source Code");
tr.td().b().tx("Relationship");
tr.td().b().tx("Target Code");
if (comment)
tr.td().b().tx("Comment");
tr = tbl.tr();
XhtmlNode td = tr.td().colspan(comment ? "4" : "3");
td.tx("Mapping from ");
if (grp.hasSource()) {
renderCanonical(cm, td, grp.getSource());
} else {
td.code("unspecified code system");
}
td.tx(" to ");
if (grp.hasTarget()) {
renderCanonical(cm, td, grp.getTarget());
} else {
td.code("unspecified code system");
}
for (SourceElementComponent ccl : grp.getElement()) {
tr = tbl.tr();
td = tr.td();
td.addText(ccl.getCode());
display = ccl.hasDisplay() ? ccl.getDisplay()
: getDisplayForConcept(grp.getSource(), ccl.getCode());
if (display != null && !isSameCodeAndDisplay(ccl.getCode(), display))
td.tx(" (" + display + ")");
TargetElementComponent ccm = ccl.getTarget().get(0);
if (!ccm.hasEquivalence())
tr.td().tx(":" + "(" + ConceptMapEquivalence.NULL.toCode() + ")");
else {
String code = ccm.getEquivalenceElement().primitiveValue();
tr.td().ah(eqpath + "#" + code).tx(presentEquivalenceCode(code));
}
td = tr.td();
td.addText(ccm.getCode());
display = ccm.hasDisplay() ? ccm.getDisplay()
: getDisplayForConcept(grp.getTarget(), ccm.getCode());
if (display != null && !isSameCodeAndDisplay(ccm.getCode(), display))
td.tx(" (" + display + ")");
if (comment)
tr.td().addText(ccm.getComment());
addUnmapped(tbl, grp);
}
} else {
boolean hasRelationships = false;
for (int si = 0; si < grp.getElement().size(); si++) {
SourceElementComponent ccl = grp.getElement().get(si);
for (int ti = 0; ti < ccl.getTarget().size(); ti++) {
TargetElementComponent ccm = ccl.getTarget().get(ti);
if (ccm.hasEquivalence()) {
hasRelationships = true;
}
}
}
XhtmlNode tbl = x.table("grid");
XhtmlNode tr = tbl.tr();
XhtmlNode td;
tr.td().colspan(Integer.toString(1 + sources.size())).b().tx("Source Concept Details");
if (hasRelationships) {
tr.td().b().tx("Relationship");
}
tr.td().colspan(Integer.toString(1 + targets.size())).b().tx("Target Concept Details");
if (comment) {
tr.td().b().tx("Comment");
}
tr = tbl.tr();
if (sources.get("code").size() == 1) {
String url = sources.get("code").iterator().next();
renderCSDetailsLink(tr, url, true);
} else
tr.td().b().tx("Code");
for (String s : sources.keySet()) {
if (!s.equals("code")) {
if (sources.get(s).size() == 1) {
String url = sources.get(s).iterator().next();
renderCSDetailsLink(tr, url, false);
} else
tr.td().b().addText(getDescForConcept(s));
}
}
if (hasRelationships) {
tr.td();
}
if (targets.get("code").size() == 1) {
String url = targets.get("code").iterator().next();
renderCSDetailsLink(tr, url, true);
} else
tr.td().b().tx("Code");
for (String s : targets.keySet()) {
if (!s.equals("code")) {
if (targets.get(s).size() == 1) {
String url = targets.get(s).iterator().next();
renderCSDetailsLink(tr, url, false);
} else
tr.td().b().addText(getDescForConcept(s));
}
}
if (comment)
tr.td();
for (int si = 0; si < grp.getElement().size(); si++) {
SourceElementComponent ccl = grp.getElement().get(si);
boolean slast = si == grp.getElement().size() - 1;
boolean first = true;
if (false) {
tr = tbl.tr();
td = tr.td().style("border-right-width: 0px");
if (!first)
td.style("border-top-style: none");
else
td.style("border-bottom-style: none");
if (sources.get("code").size() == 1)
td.addText(ccl.getCode());
else
td.addText(grp.getSource() + " / " + ccl.getCode());
display = getDisplayForConcept(grp.getSource(), ccl.getCode());
tr.td().style("border-left-width: 0px").tx(display == null ? "" : display);
tr.td().colspan("4").style("background-color: #efefef").tx("(not mapped)");
} else {
for (int ti = 0; ti < ccl.getTarget().size(); ti++) {
TargetElementComponent ccm = ccl.getTarget().get(ti);
boolean last = ti == ccl.getTarget().size() - 1;
tr = tbl.tr();
td = tr.td().style("border-right-width: 0px");
if (!first && !last)
td.style("border-top-style: none; border-bottom-style: none");
else if (!first)
td.style("border-top-style: none");
else if (!last)
td.style("border-bottom-style: none");
if (first) {
if (sources.get("code").size() == 1)
td.addText(ccl.getCode());
else
td.addText(grp.getSource() + " / " + ccl.getCode());
display = ccl.hasDisplay() ? ccl.getDisplay()
: getDisplayForConcept(grp.getSource(), ccl.getCode());
td = tr.td();
if (!last)
td.style("border-left-width: 0px; border-bottom-style: none");
else
td.style("border-left-width: 0px");
td.tx(display == null ? "" : display);
} else {
td = tr.td(); // for display
if (!last)
td.style("border-left-width: 0px; border-top-style: none; border-bottom-style: none");
else
td.style("border-top-style: none; border-left-width: 0px");
}
for (String s : sources.keySet()) {
if (!s.equals("code")) {
td = tr.td();
if (first) {
td.addText(getValue(ccm.getDependsOn(), s, sources.get(s).size() != 1));
display = getDisplay(ccm.getDependsOn(), s);
if (display != null)
td.tx(" (" + display + ")");
}
}
}
first = false;
if (hasRelationships) {
if (!ccm.hasEquivalence())
tr.td();
else {
String code = ccm.getEquivalenceElement().toString();
tr.td().ah(eqpath + "#" + code).tx(presentEquivalenceCode(code));
}
}
td = tr.td().style("border-right-width: 0px");
if (targets.get("code").size() == 1)
td.addText(ccm.getCode());
else
td.addText(grp.getTarget() + " / " + ccm.getCode());
display = ccm.hasDisplay() ? ccm.getDisplay()
: getDisplayForConcept(grp.getTarget(),
ccm.getCode());
tr.td().style("border-left-width: 0px").tx(display == null ? "" : display);
for (String s : targets.keySet()) {
if (!s.equals("code")) {
td = tr.td();
td.addText(getValue(ccm.getProduct(), s, targets.get(s).size() != 1));
display = getDisplay(ccm.getProduct(), s);
if (display != null)
td.tx(" (" + display + ")");
}
}
if (comment)
tr.td().addText(ccm.getComment());
}
}
addUnmapped(tbl, grp);
}
}
}
return true;
}
public void describe(XhtmlNode x, ConceptMap cm) {
x.tx(display(cm));
}
public String display(ConceptMap cm) {
return cm.present();
}
private boolean isSameCodeAndDisplay(String code, String display) {
String c = code.replace(" ", "").replace("-", "").toLowerCase();
String d = display.replace(" ", "").replace("-", "").toLowerCase();
return c.equals(d);
}
private String presentRelationshipCode(String code) {
if ("related-to".equals(code)) {
return "is related to";
} else if ("equivalent".equals(code)) {
return "is equivalent to";
} else if ("source-is-narrower-than-target".equals(code)) {
return "is narrower then";
} else if ("source-is-broader-than-target".equals(code)) {
return "is broader than";
} else if ("not-related-to".equals(code)) {
return "is not related to";
} else {
return code;
}
}
private String presentEquivalenceCode(String code) {
if ("relatedto".equals(code)) {
return "is related to";
} else if ("equivalent".equals(code)) {
return "is equivalent to";
} else if ("equal".equals(code)) {
return "is equal to";
} else if ("wider".equals(code)) {
return "maps to wider concept";
} else if ("subsumes".equals(code)) {
return "is subsumed by";
} else if ("source-is-broader-than-target".equals(code)) {
return "maps to narrower concept";
} else if ("specializes".equals(code)) {
return "has specialization";
} else if ("inexact".equals(code)) {
return "maps loosely to";
} else if ("unmatched".equals(code)) {
return "has no match";
} else if ("disjoint".equals(code)) {
return "is not related to";
} else {
return code;
}
}
public void renderCSDetailsLink(XhtmlNode tr, String url, boolean span2) {
CodeSystem cs;
XhtmlNode td;
cs = getContext().getWorker().fetchCodeSystem(url);
td = tr.td();
if (span2) {
td.colspan("2");
}
td.b().tx("Code");
td.tx(" from ");
if (cs == null)
td.tx(url);
else
td.ah(context.fixReference(cs.getUserString("path"))).attribute("title", url).tx(cs.present());
}
private void addUnmapped(XhtmlNode tbl, ConceptMapGroupComponent grp) {
if (grp.hasUnmapped()) {
// throw new Error("not done yet");
}
}
private String getDescForConcept(String s) {
if (s.startsWith("http://hl7.org/fhir/v2/element/"))
return "v2 " + s.substring("http://hl7.org/fhir/v2/element/".length());
return s;
}
private String getValue(List list, String s, boolean withSystem) {
for (OtherElementComponent c : list) {
if (s.equals(c.getProperty()))
if (withSystem)
return /* c.getSystem()+" / "+ */c.getValue();
else
return c.getValue();
}
return null;
}
private String getDisplay(List list, String s) {
for (OtherElementComponent c : list) {
if (s.equals(c.getProperty())) {
// return getDisplayForConcept(systemFromCanonical(c.getSystem()),
// versionFromCanonical(c.getSystem()), c.getValue());
}
}
return null;
}
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