org.hl7.fhir.utilities.npm.PackageHacker Maven / Gradle / Ivy
package org.hl7.fhir.utilities.npm;
import java.io.File;
import java.io.FileInputStream;
import java.io.FileNotFoundException;
import java.io.FileOutputStream;
import java.io.IOException;
import java.nio.charset.StandardCharsets;
import java.util.ArrayList;
import java.util.List;
import java.util.Map;
import org.hl7.fhir.utilities.TextFile;
import org.hl7.fhir.utilities.Utilities;
import org.hl7.fhir.utilities.filesystem.ManagedFileAccess;
import org.hl7.fhir.utilities.json.model.JsonArray;
import org.hl7.fhir.utilities.json.model.JsonObject;
import org.hl7.fhir.utilities.json.parser.JsonParser;
/**
* intenral use only - set the file name to edit in main(), and fill out the edit routine
*
* @author grahame
*
*/
public class PackageHacker {
private static boolean useSecureReferences = false;
public static void main(String[] args) throws FileNotFoundException, IOException {
new PackageHacker().massEdit(new File("/Users/grahamegrieve/web/hl7.org/fhir"));
// new PackageHacker().edit("/Users/grahamegrieve/web/hl7.org/fhir/us/vitals/2020Sep/package.tgz");
}
private void massEdit(File dir) throws IOException {
System.out.println("process "+dir.getAbsolutePath());
for (File f : dir.listFiles()) {
if (f.isDirectory()) {
massEdit(f);
} else if (f.getName().equals("package.tgz")) {
try {
FileInputStream fs = ManagedFileAccess.inStream(f);
NpmPackage pck = NpmPackage.fromPackage(fs);
if ("fhir.core".equals(pck.getNpm().str("type"))) {
System.out.println("!!change "+f.getAbsolutePath());
pck.getNpm().remove("type");
pck.getNpm().set("type", "Core");
FileOutputStream fso = ManagedFileAccess.outStream(f);
try {
pck.save(fso);
} finally {
fso.close();
}
}
} catch (Exception e) {
System.out.println("!!Error: "+e.getMessage());
}
} else if (f.getName().startsWith("hl7.fhir.r") && f.getName().endsWith(".examples.tgz")) {
try {
FileInputStream fs = ManagedFileAccess.inStream(f);
NpmPackage pck = NpmPackage.fromPackage(fs);
if ("fhir.examples".equals(pck.getNpm().str("type"))) {
System.out.println("!!change "+f.getAbsolutePath());
pck.getNpm().remove("type");
pck.getNpm().set("type", "Examples");
FileOutputStream fso = ManagedFileAccess.outStream(f);
try {
pck.save(fso);
} finally {
fso.close();
}
}
} catch (Exception e) {
System.out.println("!!Error: "+e.getMessage());
}
}
}
}
private void edit(String name) throws FileNotFoundException, IOException {
File f = ManagedFileAccess.file(name);
if (!f.exists())
throw new Error("Unable to find "+f.getAbsolutePath());
NpmPackage pck = null;
FileInputStream fs = ManagedFileAccess.inStream(f);
try {
pck = NpmPackage.fromPackage(fs);
} finally {
fs.close();
}
System.out.println("Altering Package "+f.getAbsolutePath());
System.out.println(nice(pck.getNpm()));
change(pck.getNpm());
System.out.println("Revised Package");
System.out.println("=======================");
System.out.println(nice(pck.getNpm()));
System.out.println("=======================");
System.out.print("save? y/n: ");
int r = System.in.read();
if (r == 'y') {
f.renameTo(ManagedFileAccess.file(Utilities.changeFileExt(name, ".tgz.bak")));
FileOutputStream fso = ManagedFileAccess.outStream(f);
try {
pck.save(fso);
} finally {
fso.close();
}
}
}
private void fixExampleContent(Map content) {
// byte[] cnt = content.get("ServiceRequest-SDOHCC-ServiceRequestCompletedFoodPantryApplicationAssistExample.json");
// content.put("ServiceRequest-SDOHCC-ServiceRequestCompletedFoodPantryApplicationAssist.json", cnt);
// content.remove("ServiceRequest-SDOHCC-ServiceRequestCompletedFoodPantryApplicationAssistExample.json");
}
private void fixContent(Map content) {
// fixVersionInContent(content);
}
private String nice(JsonObject json) {
return JsonParser.compose(json, true);
}
private void change(JsonObject npm) throws FileNotFoundException, IOException {
// fixVersions(npm, ver);
npm.remove("notForPublication");
npm.set("name", "hl7.fhir.us.vitals");
}
private void fixVersionInContent(Map content) {
for (String n : content.keySet()) {
if (n.endsWith(".json") || n.endsWith(".xml") || n.endsWith(".xsd")) {
String json = new String(content.get(n));
if (json.contains("4.3.0-cibuild") && !json.contains("4.3.0-snapshot1")) {
json = json.replace("4.3.0-cibuild", "4.3.0");
content.put(n, json.getBytes(StandardCharsets.UTF_8));
}
}
}
}
private void fixVersions(JsonObject npm) {
npm.remove("fhirVersions");
JsonArray a = new JsonArray();
npm.add("fhirVersions", a);
a.add("3.0.1");
}
private void setProperty(JsonObject npm, String name, String value) {
npm.remove("homepage");
npm.add("homepage", "http://hl7.org/fhir");
}
private void fixNames(Map content) {
List names = new ArrayList<>();
names.addAll(content.keySet());
for (String s : names) {
if (s.endsWith("json") && !s.endsWith(".json")) {
String n = s.substring(0, s.length()-4)+".json";
content.put(n, content.get(s));
content.remove(s);
}
}
}
private void addContentFrom(String folder, Map content) throws FileNotFoundException, IOException {
for (File f : ManagedFileAccess.file(folder).listFiles()) {
if (f.getName().endsWith(".json") && !f.getName().endsWith(".canonical.json")) {
String cnt = TextFile.fileToString(f);
if (cnt.contains("\"resourceType\"")) {
content.put("package/"+f.getName(), TextFile.fileToBytes(f));
}
}
}
}
public static String fixPackageUrl(String webref) {
if (webref == null) {
return null;
}
// workaround for past publishing problems
switch (webref) {
case "file://C:\\GitHub\\hl7.fhir.us.breast-radiology#0.2.0\\output": return "http://hl7.org/fhir/us/breast-radiology/2020May";
case "file://C:\\GitHub\\hl7.fhir.us.bser#1.0.0\\output": return "http://hl7.org/fhir/us/bser/STU1";
case "file://C:\\GitHub\\hl7.fhir.us.carin-bb#0.1.0\\output": return "http://hl7.org/fhir/us/carin-bb/2020Feb";
case "file://C:\\GitHub\\hl7.fhir.us.carin-rtpbc#0.1.0\\output": return "http://hl7.org/fhir/us/carin-rtpbc/2020Feb";
case "file://C:\\GitHub\\hl7.fhir.us.cqfmeasures#1.1.0\\output": return "http://hl7.org/fhir/us/cqfmeasures/2020Feb";
case "file://C:\\GitHub\\hl7.fhir.us.cqfmeasures#2.0.0\\output": return "http://hl7.org/fhir/us/cqfmeasures/STU2";
case "file://C:\\GitHub\\hl7.fhir.us.davinci-alerts#0.2.0\\output": return "http://hl7.org/fhir/us/davinci-alerts/2020Feb";
case "file://C:\\GitHub\\hl7.fhir.us.davinci-atr#0.1.0\\output": return "http://hl7.org/fhir/us/davinci-atr/2020Feb";
case "file://C:\\GitHub\\hl7.fhir.us.davinci-deqm#1.1.0\\output": return "http://hl7.org/fhir/us/davinci-deqm/2020Feb";
case "file://C:\\GitHub\\hl7.fhir.us.davinci-deqm#1.0.0\\output": return "http://hl7.org/fhir/us/davinci-deqm/STU1";
case "file://C:\\GitHub\\hl7.fhir.us.dme-orders#0.1.1\\output": return "http://hl7.org/fhir/us/dme-orders/2020May";
case "file://C:\\GitHub\\hl7.fhir.us.ecr#1.0.0\\output": return "http://hl7.org/fhir/us/ecr/STU1";
case "file://C:\\GitHub\\hl7.fhir.us.mcode#1.0.0\\output": return "http://hl7.org/fhir/us/mcode/STU1";
case "file://C:\\GitHub\\hl7.fhir.us.odh#1.0.0\\output": return "http://hl7.org/fhir/us/odh/STU1";
case "file://C:\\GitHub\\hl7.fhir.us.qicore#4.0.0\\output": return "http://hl7.org/fhir/us/qicore/STU4";
case "file://C:\\GitHub\\hl7.fhir.uv.ips#1.0.0\\output": return "http://hl7.org/fhir/uv/ips/STU1";
case "file://C:\\GitHub\\hl7.fhir.uv.mhealth-framework#0.1.0\\output": return "http://hl7.org/fhir/uv/mhealth-framework/2020May";
case "file://C:\\GitHub\\hl7.fhir.uv.security-label-ds4p#0.1.0\\output": return "http://hl7.org/fhir/uv/security-label-ds4p/2020May";
case "file://C:\\GitHub\\hl7.fhir.uv.shorthand#0.12.0\\output": return "http://hl7.org/fhir/uv/shorthand/2020May";
case "http://build.fhir.org/branches/R4B//": return "http://hl7.org/fhir/2021Mar";
}
// https://github.com/HL7/fhir-ig-publisher/issues/295
if (webref.contains("hl7.org/fhir/us/core/STU4.0.0")) {
return webref.replace("hl7.org/fhir/us/core/STU4.0.0", "hl7.org/fhir/us/core/STU4");
}
if (isUseSecureReferences()) {
return webref.replace("http://hl7.org/fhir", "https://hl7.org/fhir").replace("http://build.fhir.org", "https://build.fhir.org");
} else {
return webref;
}
}
public static boolean isUseSecureReferences() {
return useSecureReferences;
}
public static void setUseSecureReferences(boolean useSecureReferences) {
PackageHacker.useSecureReferences = useSecureReferences;
}
}