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This module contains code to support integration with Amazon Web Services.
It also declares the dependencies needed to work with AWS services.
/**
* Licensed to the Apache Software Foundation (ASF) under one
* or more contributor license agreements. See the NOTICE file
* distributed with this work for additional information
* regarding copyright ownership. The ASF licenses this file
* to you under the Apache License, Version 2.0 (the
* "License"); you may not use this file except in compliance
* with the License. You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*/
package org.apache.hadoop.fs.s3native;
import java.io.BufferedOutputStream;
import java.io.EOFException;
import java.io.File;
import java.io.FileNotFoundException;
import java.io.FileOutputStream;
import java.io.IOException;
import java.io.InputStream;
import java.io.OutputStream;
import java.net.URI;
import java.security.DigestOutputStream;
import java.security.MessageDigest;
import java.security.NoSuchAlgorithmException;
import java.util.ArrayList;
import java.util.HashMap;
import java.util.List;
import java.util.Map;
import java.util.Set;
import java.util.TreeSet;
import java.util.concurrent.TimeUnit;
import com.google.common.base.Preconditions;
import org.apache.hadoop.classification.InterfaceAudience;
import org.apache.hadoop.classification.InterfaceStability;
import org.apache.hadoop.conf.Configuration;
import org.apache.hadoop.fs.BufferedFSInputStream;
import org.apache.hadoop.fs.FSDataInputStream;
import org.apache.hadoop.fs.FSDataOutputStream;
import org.apache.hadoop.fs.FSExceptionMessages;
import org.apache.hadoop.fs.FSInputStream;
import org.apache.hadoop.fs.FileAlreadyExistsException;
import org.apache.hadoop.fs.FileStatus;
import org.apache.hadoop.fs.FileSystem;
import org.apache.hadoop.fs.LocalDirAllocator;
import org.apache.hadoop.fs.Path;
import org.apache.hadoop.fs.permission.FsPermission;
import org.apache.hadoop.fs.s3.S3Exception;
import org.apache.hadoop.io.IOUtils;
import org.apache.hadoop.io.retry.RetryPolicies;
import org.apache.hadoop.io.retry.RetryPolicy;
import org.apache.hadoop.io.retry.RetryProxy;
import org.apache.hadoop.util.Progressable;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
/**
* A {@link FileSystem} for reading and writing files stored on
* Amazon S3.
* Unlike {@link org.apache.hadoop.fs.s3.S3FileSystem} this implementation
* stores files on S3 in their
* native form so they can be read by other S3 tools.
*
* A note about directories. S3 of course has no "native" support for them.
* The idiom we choose then is: for any directory created by this class,
* we use an empty object "#{dirpath}_$folder$" as a marker.
* Further, to interoperate with other S3 tools, we also accept the following:
*
* - an object "#{dirpath}/' denoting a directory marker
* -
* if there exists any objects with the prefix "#{dirpath}/", then the
* directory is said to exist
*
* -
* if both a file with the name of a directory and a marker for that
* directory exists, then the *file masks the directory*, and the directory
* is never returned.
*
*
*
* @see org.apache.hadoop.fs.s3.S3FileSystem
*/
@InterfaceAudience.Public
@InterfaceStability.Stable
public class NativeS3FileSystem extends FileSystem {
public static final Logger LOG =
LoggerFactory.getLogger(NativeS3FileSystem.class);
private static final String FOLDER_SUFFIX = "_$folder$";
static final String PATH_DELIMITER = Path.SEPARATOR;
private static final int S3_MAX_LISTING_LENGTH = 1000;
static class NativeS3FsInputStream extends FSInputStream {
private NativeFileSystemStore store;
private Statistics statistics;
private InputStream in;
private final String key;
private long pos = 0;
public NativeS3FsInputStream(NativeFileSystemStore store, Statistics statistics, InputStream in, String key) {
Preconditions.checkNotNull(in, "Null input stream");
this.store = store;
this.statistics = statistics;
this.in = in;
this.key = key;
}
@Override
public synchronized int read() throws IOException {
int result;
try {
result = in.read();
} catch (IOException e) {
LOG.info("Received IOException while reading '{}', attempting to reopen",
key);
LOG.debug("{}", e, e);
try {
reopen(pos);
result = in.read();
} catch (EOFException eof) {
LOG.debug("EOF on input stream read: {}", eof, eof);
result = -1;
}
}
if (result != -1) {
pos++;
}
if (statistics != null && result != -1) {
statistics.incrementBytesRead(1);
}
return result;
}
@Override
public synchronized int read(byte[] b, int off, int len)
throws IOException {
if (in == null) {
throw new EOFException("Cannot read closed stream");
}
int result = -1;
try {
result = in.read(b, off, len);
} catch (EOFException eof) {
throw eof;
} catch (IOException e) {
LOG.info( "Received IOException while reading '{}'," +
" attempting to reopen.", key);
reopen(pos);
result = in.read(b, off, len);
}
if (result > 0) {
pos += result;
}
if (statistics != null && result > 0) {
statistics.incrementBytesRead(result);
}
return result;
}
@Override
public synchronized void close() throws IOException {
closeInnerStream();
}
/**
* Close the inner stream if not null. Even if an exception
* is raised during the close, the field is set to null
*/
private void closeInnerStream() {
IOUtils.closeStream(in);
in = null;
}
/**
* Reopen a new input stream with the specified position
* @param pos the position to reopen a new stream
* @throws IOException
*/
private synchronized void reopen(long pos) throws IOException {
LOG.debug("Reopening key '{}' for reading at position '{}", key, pos);
InputStream newStream = store.retrieve(key, pos);
updateInnerStream(newStream, pos);
}
/**
* Update inner stream with a new stream and position
* @param newStream new stream -must not be null
* @param newpos new position
* @throws IOException IO exception on a failure to close the existing
* stream.
*/
private synchronized void updateInnerStream(InputStream newStream, long newpos) throws IOException {
Preconditions.checkNotNull(newStream, "Null newstream argument");
closeInnerStream();
in = newStream;
this.pos = newpos;
}
@Override
public synchronized void seek(long newpos) throws IOException {
if (newpos < 0) {
throw new EOFException(
FSExceptionMessages.NEGATIVE_SEEK);
}
if (pos != newpos) {
// the seek is attempting to move the current position
reopen(newpos);
}
}
@Override
public synchronized long getPos() throws IOException {
return pos;
}
@Override
public boolean seekToNewSource(long targetPos) throws IOException {
return false;
}
}
private class NativeS3FsOutputStream extends OutputStream {
private Configuration conf;
private String key;
private File backupFile;
private OutputStream backupStream;
private MessageDigest digest;
private boolean closed;
private LocalDirAllocator lDirAlloc;
public NativeS3FsOutputStream(Configuration conf,
NativeFileSystemStore store, String key, Progressable progress,
int bufferSize) throws IOException {
this.conf = conf;
this.key = key;
this.backupFile = newBackupFile();
LOG.info("OutputStream for key '" + key + "' writing to tempfile '" + this.backupFile + "'");
try {
this.digest = MessageDigest.getInstance("MD5");
this.backupStream = new BufferedOutputStream(new DigestOutputStream(
new FileOutputStream(backupFile), this.digest));
} catch (NoSuchAlgorithmException e) {
LOG.warn("Cannot load MD5 digest algorithm," +
"skipping message integrity check.", e);
this.backupStream = new BufferedOutputStream(
new FileOutputStream(backupFile));
}
}
private File newBackupFile() throws IOException {
if (lDirAlloc == null) {
lDirAlloc = new LocalDirAllocator("fs.s3.buffer.dir");
}
File result = lDirAlloc.createTmpFileForWrite("output-", LocalDirAllocator.SIZE_UNKNOWN, conf);
result.deleteOnExit();
return result;
}
@Override
public void flush() throws IOException {
backupStream.flush();
}
@Override
public synchronized void close() throws IOException {
if (closed) {
return;
}
backupStream.close();
LOG.info("OutputStream for key '{}' closed. Now beginning upload", key);
try {
byte[] md5Hash = digest == null ? null : digest.digest();
store.storeFile(key, backupFile, md5Hash);
} finally {
if (!backupFile.delete()) {
LOG.warn("Could not delete temporary s3n file: " + backupFile);
}
super.close();
closed = true;
}
LOG.info("OutputStream for key '{}' upload complete", key);
}
@Override
public void write(int b) throws IOException {
backupStream.write(b);
}
@Override
public void write(byte[] b, int off, int len) throws IOException {
backupStream.write(b, off, len);
}
}
private URI uri;
private NativeFileSystemStore store;
private Path workingDir;
public NativeS3FileSystem() {
// set store in initialize()
}
public NativeS3FileSystem(NativeFileSystemStore store) {
this.store = store;
}
/**
* Return the protocol scheme for the FileSystem.
*
* @return s3n
*/
@Override
public String getScheme() {
return "s3n";
}
@Override
public void initialize(URI uri, Configuration conf) throws IOException {
super.initialize(uri, conf);
if (store == null) {
store = createDefaultStore(conf);
}
store.initialize(uri, conf);
setConf(conf);
this.uri = URI.create(uri.getScheme() + "://" + uri.getAuthority());
this.workingDir =
new Path("/user", System.getProperty("user.name")).makeQualified(this.uri, this.getWorkingDirectory());
}
private static NativeFileSystemStore createDefaultStore(Configuration conf) {
NativeFileSystemStore store = new Jets3tNativeFileSystemStore();
RetryPolicy basePolicy = RetryPolicies.retryUpToMaximumCountWithFixedSleep(
conf.getInt("fs.s3.maxRetries", 4),
conf.getLong("fs.s3.sleepTimeSeconds", 10), TimeUnit.SECONDS);
Map, RetryPolicy> exceptionToPolicyMap =
new HashMap, RetryPolicy>();
exceptionToPolicyMap.put(IOException.class, basePolicy);
exceptionToPolicyMap.put(S3Exception.class, basePolicy);
RetryPolicy methodPolicy = RetryPolicies.retryByException(
RetryPolicies.TRY_ONCE_THEN_FAIL, exceptionToPolicyMap);
Map methodNameToPolicyMap =
new HashMap();
methodNameToPolicyMap.put("storeFile", methodPolicy);
methodNameToPolicyMap.put("rename", methodPolicy);
return (NativeFileSystemStore)
RetryProxy.create(NativeFileSystemStore.class, store,
methodNameToPolicyMap);
}
private static String pathToKey(Path path) {
if (path.toUri().getScheme() != null && path.toUri().getPath().isEmpty()) {
// allow uris without trailing slash after bucket to refer to root,
// like s3n://mybucket
return "";
}
if (!path.isAbsolute()) {
throw new IllegalArgumentException("Path must be absolute: " + path);
}
String ret = path.toUri().getPath().substring(1); // remove initial slash
if (ret.endsWith("/") && (ret.indexOf("/") != ret.length() - 1)) {
ret = ret.substring(0, ret.length() -1);
}
return ret;
}
private static Path keyToPath(String key) {
return new Path("/" + key);
}
private Path makeAbsolute(Path path) {
if (path.isAbsolute()) {
return path;
}
return new Path(workingDir, path);
}
/** This optional operation is not yet supported. */
@Override
public FSDataOutputStream append(Path f, int bufferSize,
Progressable progress) throws IOException {
throw new IOException("Not supported");
}
@Override
public FSDataOutputStream create(Path f, FsPermission permission,
boolean overwrite, int bufferSize, short replication, long blockSize,
Progressable progress) throws IOException {
if (exists(f) && !overwrite) {
throw new FileAlreadyExistsException("File already exists: " + f);
}
if(LOG.isDebugEnabled()) {
LOG.debug("Creating new file '" + f + "' in S3");
}
Path absolutePath = makeAbsolute(f);
String key = pathToKey(absolutePath);
return new FSDataOutputStream(new NativeS3FsOutputStream(getConf(), store,
key, progress, bufferSize), statistics);
}
@Override
public boolean delete(Path f, boolean recurse) throws IOException {
FileStatus status;
try {
status = getFileStatus(f);
} catch (FileNotFoundException e) {
if(LOG.isDebugEnabled()) {
LOG.debug("Delete called for '" + f +
"' but file does not exist, so returning false");
}
return false;
}
Path absolutePath = makeAbsolute(f);
String key = pathToKey(absolutePath);
if (status.isDirectory()) {
if (!recurse && listStatus(f).length > 0) {
throw new IOException("Can not delete " + f + " as is a not empty directory and recurse option is false");
}
createParent(f);
if(LOG.isDebugEnabled()) {
LOG.debug("Deleting directory '" + f + "'");
}
String priorLastKey = null;
do {
PartialListing listing = store.list(key, S3_MAX_LISTING_LENGTH, priorLastKey, true);
for (FileMetadata file : listing.getFiles()) {
store.delete(file.getKey());
}
priorLastKey = listing.getPriorLastKey();
} while (priorLastKey != null);
try {
store.delete(key + FOLDER_SUFFIX);
} catch (FileNotFoundException e) {
//this is fine, we don't require a marker
}
} else {
if(LOG.isDebugEnabled()) {
LOG.debug("Deleting file '" + f + "'");
}
createParent(f);
store.delete(key);
}
return true;
}
@Override
public FileStatus getFileStatus(Path f) throws IOException {
Path absolutePath = makeAbsolute(f);
String key = pathToKey(absolutePath);
if (key.length() == 0) { // root always exists
return newDirectory(absolutePath);
}
if(LOG.isDebugEnabled()) {
LOG.debug("getFileStatus retrieving metadata for key '" + key + "'");
}
FileMetadata meta = store.retrieveMetadata(key);
if (meta != null) {
if(LOG.isDebugEnabled()) {
LOG.debug("getFileStatus returning 'file' for key '" + key + "'");
}
return newFile(meta, absolutePath);
}
if (store.retrieveMetadata(key + FOLDER_SUFFIX) != null) {
if(LOG.isDebugEnabled()) {
LOG.debug("getFileStatus returning 'directory' for key '" + key +
"' as '" + key + FOLDER_SUFFIX + "' exists");
}
return newDirectory(absolutePath);
}
if(LOG.isDebugEnabled()) {
LOG.debug("getFileStatus listing key '" + key + "'");
}
PartialListing listing = store.list(key, 1);
if (listing.getFiles().length > 0 ||
listing.getCommonPrefixes().length > 0) {
if(LOG.isDebugEnabled()) {
LOG.debug("getFileStatus returning 'directory' for key '" + key +
"' as it has contents");
}
return newDirectory(absolutePath);
}
if(LOG.isDebugEnabled()) {
LOG.debug("getFileStatus could not find key '" + key + "'");
}
throw new FileNotFoundException("No such file or directory '" + absolutePath + "'");
}
@Override
public URI getUri() {
return uri;
}
/**
*
* If f is a file, this method will make a single call to S3.
* If f is a directory, this method will make a maximum of
* (n / 1000) + 2 calls to S3, where n is the total number of
* files and directories contained directly in f.
*
*/
@Override
public FileStatus[] listStatus(Path f) throws IOException {
Path absolutePath = makeAbsolute(f);
String key = pathToKey(absolutePath);
if (key.length() > 0) {
FileMetadata meta = store.retrieveMetadata(key);
if (meta != null) {
return new FileStatus[] { newFile(meta, absolutePath) };
}
}
URI pathUri = absolutePath.toUri();
Set status = new TreeSet();
String priorLastKey = null;
do {
PartialListing listing = store.list(key, S3_MAX_LISTING_LENGTH, priorLastKey, false);
for (FileMetadata fileMetadata : listing.getFiles()) {
Path subpath = keyToPath(fileMetadata.getKey());
String relativePath = pathUri.relativize(subpath.toUri()).getPath();
if (fileMetadata.getKey().equals(key + "/")) {
// this is just the directory we have been asked to list
}
else if (relativePath.endsWith(FOLDER_SUFFIX)) {
status.add(newDirectory(new Path(
absolutePath,
relativePath.substring(0, relativePath.indexOf(FOLDER_SUFFIX)))));
}
else {
status.add(newFile(fileMetadata, subpath));
}
}
for (String commonPrefix : listing.getCommonPrefixes()) {
Path subpath = keyToPath(commonPrefix);
String relativePath = pathUri.relativize(subpath.toUri()).getPath();
status.add(newDirectory(new Path(absolutePath, relativePath)));
}
priorLastKey = listing.getPriorLastKey();
} while (priorLastKey != null);
if (status.isEmpty() &&
key.length() > 0 &&
store.retrieveMetadata(key + FOLDER_SUFFIX) == null) {
throw new FileNotFoundException("File " + f + " does not exist.");
}
return status.toArray(new FileStatus[status.size()]);
}
private FileStatus newFile(FileMetadata meta, Path path) {
return new FileStatus(meta.getLength(), false, 1, getDefaultBlockSize(),
meta.getLastModified(), path.makeQualified(this.getUri(), this.getWorkingDirectory()));
}
private FileStatus newDirectory(Path path) {
return new FileStatus(0, true, 1, 0, 0, path.makeQualified(this.getUri(), this.getWorkingDirectory()));
}
@Override
public boolean mkdirs(Path f, FsPermission permission) throws IOException {
Path absolutePath = makeAbsolute(f);
List paths = new ArrayList();
do {
paths.add(0, absolutePath);
absolutePath = absolutePath.getParent();
} while (absolutePath != null);
boolean result = true;
for (Path path : paths) {
result &= mkdir(path);
}
return result;
}
private boolean mkdir(Path f) throws IOException {
try {
FileStatus fileStatus = getFileStatus(f);
if (fileStatus.isFile()) {
throw new FileAlreadyExistsException(String.format(
"Can't make directory for path '%s' since it is a file.", f));
}
} catch (FileNotFoundException e) {
if(LOG.isDebugEnabled()) {
LOG.debug("Making dir '" + f + "' in S3");
}
String key = pathToKey(f) + FOLDER_SUFFIX;
store.storeEmptyFile(key);
}
return true;
}
@Override
public FSDataInputStream open(Path f, int bufferSize) throws IOException {
FileStatus fs = getFileStatus(f); // will throw if the file doesn't exist
if (fs.isDirectory()) {
throw new FileNotFoundException("'" + f + "' is a directory");
}
LOG.info("Opening '" + f + "' for reading");
Path absolutePath = makeAbsolute(f);
String key = pathToKey(absolutePath);
return new FSDataInputStream(new BufferedFSInputStream(
new NativeS3FsInputStream(store, statistics, store.retrieve(key), key), bufferSize));
}
// rename() and delete() use this method to ensure that the parent directory
// of the source does not vanish.
private void createParent(Path path) throws IOException {
Path parent = path.getParent();
if (parent != null) {
String key = pathToKey(makeAbsolute(parent));
if (key.length() > 0) {
store.storeEmptyFile(key + FOLDER_SUFFIX);
}
}
}
@Override
public boolean rename(Path src, Path dst) throws IOException {
String srcKey = pathToKey(makeAbsolute(src));
if (srcKey.length() == 0) {
// Cannot rename root of file system
return false;
}
final String debugPreamble = "Renaming '" + src + "' to '" + dst + "' - ";
// Figure out the final destination
String dstKey;
try {
boolean dstIsFile = getFileStatus(dst).isFile();
if (dstIsFile) {
if(LOG.isDebugEnabled()) {
LOG.debug(debugPreamble +
"returning false as dst is an already existing file");
}
return false;
} else {
if(LOG.isDebugEnabled()) {
LOG.debug(debugPreamble + "using dst as output directory");
}
dstKey = pathToKey(makeAbsolute(new Path(dst, src.getName())));
}
} catch (FileNotFoundException e) {
if(LOG.isDebugEnabled()) {
LOG.debug(debugPreamble + "using dst as output destination");
}
dstKey = pathToKey(makeAbsolute(dst));
try {
if (getFileStatus(dst.getParent()).isFile()) {
if(LOG.isDebugEnabled()) {
LOG.debug(debugPreamble +
"returning false as dst parent exists and is a file");
}
return false;
}
} catch (FileNotFoundException ex) {
if(LOG.isDebugEnabled()) {
LOG.debug(debugPreamble +
"returning false as dst parent does not exist");
}
return false;
}
}
boolean srcIsFile;
try {
srcIsFile = getFileStatus(src).isFile();
} catch (FileNotFoundException e) {
if(LOG.isDebugEnabled()) {
LOG.debug(debugPreamble + "returning false as src does not exist");
}
return false;
}
if (srcIsFile) {
if(LOG.isDebugEnabled()) {
LOG.debug(debugPreamble +
"src is file, so doing copy then delete in S3");
}
store.copy(srcKey, dstKey);
store.delete(srcKey);
} else {
if(LOG.isDebugEnabled()) {
LOG.debug(debugPreamble + "src is directory, so copying contents");
}
store.storeEmptyFile(dstKey + FOLDER_SUFFIX);
List keysToDelete = new ArrayList();
String priorLastKey = null;
do {
PartialListing listing = store.list(srcKey, S3_MAX_LISTING_LENGTH, priorLastKey, true);
for (FileMetadata file : listing.getFiles()) {
keysToDelete.add(file.getKey());
store.copy(file.getKey(), dstKey + file.getKey().substring(srcKey.length()));
}
priorLastKey = listing.getPriorLastKey();
} while (priorLastKey != null);
if(LOG.isDebugEnabled()) {
LOG.debug(debugPreamble +
"all files in src copied, now removing src files");
}
for (String key: keysToDelete) {
store.delete(key);
}
try {
store.delete(srcKey + FOLDER_SUFFIX);
} catch (FileNotFoundException e) {
//this is fine, we don't require a marker
}
if(LOG.isDebugEnabled()) {
LOG.debug(debugPreamble + "done");
}
}
return true;
}
@Override
public long getDefaultBlockSize() {
return getConf().getLong("fs.s3n.block.size", 64 * 1024 * 1024);
}
/**
* Set the working directory to the given directory.
*/
@Override
public void setWorkingDirectory(Path newDir) {
workingDir = newDir;
}
@Override
public Path getWorkingDirectory() {
return workingDir;
}
@Override
public String getCanonicalServiceName() {
// Does not support Token
return null;
}
}
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