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common objects for orbit image analysis
/*
* Orbit, a versatile image analysis software for biological image-based quantification.
* Copyright (C) 2009 - 2016 Actelion Pharmaceuticals Ltd., Gewerbestrasse 16, CH-4123 Allschwil, Switzerland.
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with this program. If not, see .
*
*/
package com.actelion.research.orbit.browser;
import com.actelion.research.orbit.beans.RawDataFile;
import com.actelion.research.orbit.utils.IRdfToInputStream;
import com.actelion.research.orbit.utils.Logger;
import javax.swing.*;
import java.awt.*;
import java.awt.event.ActionEvent;
import java.awt.event.ActionListener;
import java.awt.event.WindowAdapter;
import java.awt.event.WindowEvent;
import java.io.BufferedInputStream;
import java.io.BufferedOutputStream;
import java.io.FileOutputStream;
import java.util.List;
public class DownloadDialog extends JDialog {
private static final long serialVersionUID = 1L;
private Logger logger = Logger.getLogger(DownloadDialog.class);
protected static final int BUFFER_SIZE = 1024 * 64;
final protected JLabel label = new JLabel();
final protected JProgressBar progressBar = new JProgressBar();
final protected JButton cancelBtn = new JButton("Cancel");
protected List rdfList = null;
protected String dir = "";
protected boolean cancel = false;
protected int numFiles = 1;
protected IRdfToInputStream rdfToInputStream;
public DownloadDialog(String title, List rdfList, String dir, IRdfToInputStream rdfToInputStream) {
this.rdfList = rdfList;
this.dir = dir;
this.rdfToInputStream = rdfToInputStream;
setModal(false);
setAlwaysOnTop(true);
setTitle(title);
progressBar.setValue(0);
progressBar.setStringPainted(true);
cancelBtn.addActionListener(new ActionListener() {
public void actionPerformed(ActionEvent e) {
cancel = true;
setVisible(false);
}
});
JPanel btnPanel = new JPanel();
btnPanel.add(cancelBtn);
setDefaultCloseOperation(JFrame.DO_NOTHING_ON_CLOSE);
addWindowListener(new WindowAdapter() {
public void windowClosing(WindowEvent e) {
cancel = true;
setVisible(false);
}
});
//layout
setLayout(new GridBagLayout());
add(label, new GridBagConstraints(0, 0, GridBagConstraints.REMAINDER, 1, 1, 0, GridBagConstraints.NORTHWEST, GridBagConstraints.NONE, new Insets(5, 5, 0, 0), 0, 0));
add(progressBar, new GridBagConstraints(0, 1, GridBagConstraints.REMAINDER, 1, 1, 0, GridBagConstraints.NORTHWEST, GridBagConstraints.HORIZONTAL, new Insets(5, 5, 0, 0), 0, 0));
add(btnPanel, new GridBagConstraints(0, 2, GridBagConstraints.REMAINDER, 1, 1, 0, GridBagConstraints.SOUTHEAST, GridBagConstraints.NONE, new Insets(5, 5, 5, 5), 0, 0));
setSize(new Dimension(400, 150));
}
public void downloadRDFs() {
setModal(true);
SwingWorker downloadWorker = new DownloadWorker(rdfList, dir);
SwingUtilities.invokeLater(downloadWorker);
//downloadWorker.execute();
}
protected class DownloadWorker extends SwingWorker {
List rdfList = null;
String dir = "";
public DownloadWorker(List rdfList, String dir) {
this.rdfList = rdfList;
this.dir = dir;
}
@Override
protected Void doInBackground() throws Exception {
if (rdfList == null || rdfList.size() == 0 || dir.equals("")) return null;
BufferedOutputStream os = null;
BufferedInputStream is = null;
byte[] buf = new byte[BUFFER_SIZE];
try {
numFiles = rdfList.size();
int numDone = 0;
for (RawDataFile rdf : rdfList) {
os = new BufferedOutputStream(new FileOutputStream(dir + rdf.getFileName()));
is = new BufferedInputStream(rdfToInputStream.getInputStream(rdf));
int bytesRead = 0;
while ((bytesRead = is.read(buf)) > 0) {
if (cancel) {
try {
os.flush();
os.close();
is.close();
buf = null;
} catch (Exception e) {
}
return null;
}
os.write(buf, 0, bytesRead);
}
os.flush();
os.close();
is.close();
numDone++;
//firePropertyChange("numDone", null, new Integer(numDone));
final int val = (int) ((numDone / (double) numFiles) * 100d);
progressBar.setValue(val);
progressBar.setString(val + "%");
label.setText("Download: " + numDone + " / " + numFiles);
repaint();
}
cancelBtn.setText("Close");
} catch (Exception e) {
logger.error("download error: " + e.getMessage());
} finally {
try {
buf = null;
os.close();
is.close();
} catch (Exception e) {
}
}
return null;
}
}
}