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/*
* Copyright (c) 1997 - 2016
* Actelion Pharmaceuticals Ltd.
* Gewerbestrasse 16
* CH-4123 Allschwil, Switzerland
*
* All rights reserved.
*
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are met:
*
* 1. Redistributions of source code must retain the above copyright notice, this
*    list of conditions and the following disclaimer.
* 2. Redistributions in binary form must reproduce the above copyright notice,
*    this list of conditions and the following disclaimer in the documentation
*    and/or other materials provided with the distribution.
* 3. Neither the name of the the copyright holder nor the
*    names of its contributors may be used to endorse or promote products
*    derived from this software without specific prior written permission.
*
* THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
* ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
* WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
* DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
* ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
* (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
* LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
* ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
* (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
* SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
*
*/

package com.actelion.research.chem.properties.complexity;

import java.util.ArrayList;
import java.util.List;

import com.actelion.research.util.datamodel.IntArray;

public class ContainerBitArray {
	
	private static boolean ELUSIVE = false;

	private static final int CAPACITY_ADD = 1 << 10;
	
	private static final int MAX_CAPACITY_ADD = 1 << 28;
	
	private static final int LIMIT2FULL = 1500000000;
	
	private static final int CAPACITY_FULL = Integer.MAX_VALUE;
	
	
	private List li;
			
	private IntArray arrAvailable;
	
	private int capacityAdd;

	private int bits;
	
	IBitArrayFactory bitArrayCreator;
	
	/**
	 * 
	 * @param bits is the number of available bits in the binary vector. 
	 * @param capacity
	 */
	public ContainerBitArray(int bits, int capacity) {
		
		if(bits == BitArray128.MAX_NUM_BITS){
			bitArrayCreator = new BitArray128Factory();
		} else {
			throw new RuntimeException("Do not know a factory to construct " + bits + " bits array.");
		}
		
		this.bits = bits;
		
		if(capacity > LIMIT2FULL) {
			capacity = CAPACITY_FULL;
		}
		
		capacityAdd = CAPACITY_ADD;
	
		arrAvailable = new IntArray(capacity);
		
		li = new ArrayList(capacity);
		
		
		
		addResources(capacity);
	}
	
	@SuppressWarnings("unchecked")
	public void calculateHash(IBitArray f){
		
		((IBitArrayFactory)bitArrayCreator).calculateHash(f);
	}

	public int getSizeBinaryArray(){
		return bits;
	}
	
	public void reset(){
		
		arrAvailable.reset();
		for (int i = 0; i < li.size(); i++) {
			arrAvailable.add(i);
		}
	}
	
	
	private void addResources(int capacity) {
		
		if(li.size() == Integer.MAX_VALUE){
			new RuntimeException("Maximum capacity reached").toString();
			return;
		}
		
		int indexStart = li.size();
		
		for (int i = 0; i < capacity; i++) {
			
			int index = indexStart+i;
			
			li.add(bitArrayCreator.getNew(index));
			
			arrAvailable.add(index);
			
			if(li.size() == Integer.MAX_VALUE){
				new RuntimeException("Maximum capacity reached").toString();
				break;
			}
		}
	}
	/**
	 * 
	 * @return a fresh (reseted) instance.
	 */
	public IBitArray get(){
		
		if(arrAvailable.length()==0){
			
			addResources(capacityAdd);
			
			if(ELUSIVE){
				System.out.println("ContainerBitArray capacity increased by " + capacityAdd + " objects.");
			}

			if(capacityAdd