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Open Source Chemistry Library
package com.actelion.research.chem.reaction;
public interface ReactionSearchDataSource {
public static final long SEARCH_TYPE_NOT_SUPPORTED = -1L;
/**
* Returns true if idcodes and/or hash codes for this particular
* search specification are directly available by the source, i.e. without
* calculating idcodes, descriptors or hash codes on-the-fly.
* In case of search types other than substructure search the implementation needs
* to check specification.isLargestFragmentOnly(). In case of similarity
* searches the implementation needs to consider specification.getDescriptorShortName().
*
* @param specification
* @return
*/
public boolean isSupportedSearchType(ReactionSearchSpecification specification);
/**
* This is the total number of records, whether they qualify for a structure search or not.
*
* @return
*/
public int getRowCount();
/**
* @param row
* @return null if this row has no reaction descriptor
*/
public long[] getReactionDescriptor(int row);
/**
* @param row
* @return null if this row has no reactant descriptor
*/
public long[] getReactantDescriptor(int row);
/**
* @param row
* @return null if this row has no product descriptor
*/
public long[] getProductDescriptor(int row);
/**
* Returns the reaction idcode.
* If the code is not available, null is returned.
* This method is not supposed to calculate idcodes on-the-fly.
*
* @param row
* @return idcode of this row or null, if no reaction is associated to this row
*/
public byte[] getReactionCode(int row);
/**
* Returns the encoded reaction coordinates.
*
* @param row
* @return coords of this row or null, if no reaction is associated to this row
*/
public byte[] getCoordinates(int row);
/**
* Returns the encoded reaction mapping.
*
* @param row
* @return mapping of this row or null, if no reaction is associated to this row
*/
public byte[] getMapping(int row);
/**
* Returns a hash code representing the exact reaction.
* If this code is not available, SEARCH_TYPE_NOT_SUPPORTED is returned.
* This method is not supposed to calculate the code on-the-fly.
*
* @param row
* @return
*/
public long getExactHash(int row);
/**
* Returns a hash code representing the reaction without any stereo information.
* If this code is not available, SEARCH_TYPE_NOT_SUPPORTED is returned.
* This method is not supposed to calculate the code on-the-fly.
*
* @param row
* @return
*/
public long getNoStereoHash(int row);
}
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