com.babylonhealth.lit.usbase_java.builders.SubstanceNucleicAcidBuilder Maven / Gradle / Ivy
package com.babylonhealth.lit.usbase_java.builders;
import java.time.LocalDate;
import java.time.LocalTime;
import java.time.ZonedDateTime;
import java.util.Arrays;
import java.util.Collection;
import java.util.Collections;
import java.util.Optional;
import java.util.UUID;
import java.util.stream.Stream;
import java.util.stream.Collectors;
import scala.math.BigDecimal;
import scala.Option;
import scala.collection.immutable.Seq;
import scala.jdk.javaapi.CollectionConverters;
import scala.jdk.javaapi.OptionConverters;
import lombok.NonNull;
import com.babylonhealth.lit.core.FHIRComponentFieldMeta;
import com.babylonhealth.lit.core.FHIRDateTime;
import com.babylonhealth.lit.core.FHIRDate;
import com.babylonhealth.lit.core.LitSeqJCollector;
import com.babylonhealth.lit.core.LitSeq;
import com.babylonhealth.lit.core.LitSeq$;
import com.babylonhealth.lit.core.NonEmptyLitSeqJCollector;
import com.babylonhealth.lit.core.Choice;
import com.babylonhealth.lit.core.Choice$;
import com.babylonhealth.lit.core.model.*;
import com.babylonhealth.lit.hl7.model.*;
import com.babylonhealth.lit.usbase.model.*;
import com.babylonhealth.lit.core_java.builders.*;
import com.babylonhealth.lit.hl7_java.builders.*;
import com.babylonhealth.lit.usbase_java.builders.*;
import com.babylonhealth.lit.core_java.model.Unions.*;
import com.babylonhealth.lit.hl7_java.model.Unions.*;
import com.babylonhealth.lit.usbase_java.model.Unions.*;
import com.babylonhealth.lit.core.LANGUAGES;
import com.babylonhealth.lit.core.$bslash$div;
import com.babylonhealth.lit.core_java.LitUtils;
import static com.babylonhealth.lit.core_java.LitUtils.autoSuffix;
import static com.babylonhealth.lit.core_java.LitUtils.guard;
import static java.util.stream.Collectors.toList;
public interface SubstanceNucleicAcidBuilder extends DomainResourceBuilder {
public SubstanceNucleicAcid build();
public static Impl init() {
return new Impl();
}
public static Impl builder() {
return new Impl();
}
public class Impl implements SubstanceNucleicAcidBuilder {
private Optional id = Optional.empty();
private Optional meta = Optional.empty();
private Optional text = Optional.empty();
private Optional language = Optional.empty();
private Collection contained = Collections.emptyList();
private Collection extension = Collections.emptyList();
private Optional sequenceType = Optional.empty();
private Optional implicitRules = Optional.empty();
private Optional numberOfSubunits = Optional.empty();
private Collection modifierExtension = Collections.emptyList();
private Optional areaOfHybridisation = Optional.empty();
private Optional oligoNucleotideType = Optional.empty();
private Collection subunit = Collections.emptyList();
/** Required fields for {@link SubstanceNucleicAcid} */
public Impl() {}
/**
* @param id - The logical id of the resource, as used in the URL for the resource. Once
* assigned, this value never changes.
*/
public SubstanceNucleicAcidBuilder.Impl withId(@NonNull String id) {
this.id = Optional.of(id);
return this;
}
/**
* @param meta - The metadata about the resource. This is content that is maintained by the
* infrastructure. Changes to the content might not always be associated with version
* changes to the resource.
*/
public SubstanceNucleicAcidBuilder.Impl withMeta(@NonNull Meta meta) {
this.meta = Optional.of(meta);
return this;
}
public SubstanceNucleicAcidBuilder.Impl withMeta(@NonNull MetaBuilder meta) {
this.meta = Optional.of(meta.build());
return this;
}
/**
* @param text - A human-readable narrative that contains a summary of the resource and can be
* used to represent the content of the resource to a human. The narrative need not encode
* all the structured data, but is required to contain sufficient detail to make it
* "clinically safe" for a human to just read the narrative. Resource definitions may define
* what content should be represented in the narrative to ensure clinical safety.
*/
public SubstanceNucleicAcidBuilder.Impl withText(@NonNull Narrative text) {
this.text = Optional.of(text);
return this;
}
public SubstanceNucleicAcidBuilder.Impl withText(@NonNull NarrativeBuilder text) {
this.text = Optional.of(text.build());
return this;
}
/** @param language - The base language in which the resource is written. */
public SubstanceNucleicAcidBuilder.Impl withLanguage(@NonNull LANGUAGES language) {
this.language = Optional.of(language);
return this;
}
/**
* @param contained - These resources do not have an independent existence apart from the
* resource that contains them - they cannot be identified independently, and nor can they
* have their own independent transaction scope.
*/
public SubstanceNucleicAcidBuilder.Impl withContained(@NonNull Resource... contained) {
this.contained = Arrays.asList(contained);
return this;
}
/**
* @param contained - These resources do not have an independent existence apart from the
* resource that contains them - they cannot be identified independently, and nor can they
* have their own independent transaction scope.
*/
public SubstanceNucleicAcidBuilder.Impl withContained(@NonNull Collection contained) {
this.contained = Collections.unmodifiableCollection(contained);
return this;
}
public SubstanceNucleicAcidBuilder.Impl withContained(@NonNull ResourceBuilder... contained) {
this.contained = Arrays.stream(contained).map(e -> e.build()).collect(toList());
return this;
}
/**
* @param extension - May be used to represent additional information that is not part of the
* basic definition of the resource. To make the use of extensions safe and manageable,
* there is a strict set of governance applied to the definition and use of extensions.
* Though any implementer can define an extension, there is a set of requirements that SHALL
* be met as part of the definition of the extension.
*/
public SubstanceNucleicAcidBuilder.Impl withExtension(@NonNull Extension... extension) {
this.extension = Arrays.asList(extension);
return this;
}
/**
* @param extension - May be used to represent additional information that is not part of the
* basic definition of the resource. To make the use of extensions safe and manageable,
* there is a strict set of governance applied to the definition and use of extensions.
* Though any implementer can define an extension, there is a set of requirements that SHALL
* be met as part of the definition of the extension.
*/
public SubstanceNucleicAcidBuilder.Impl withExtension(
@NonNull Collection extension) {
this.extension = Collections.unmodifiableCollection(extension);
return this;
}
public SubstanceNucleicAcidBuilder.Impl withExtension(@NonNull ExtensionBuilder... extension) {
this.extension = Arrays.stream(extension).map(e -> e.build()).collect(toList());
return this;
}
/**
* @param sequenceType - The type of the sequence shall be specified based on a controlled
* vocabulary.
*/
public SubstanceNucleicAcidBuilder.Impl withSequenceType(
@NonNull CodeableConcept sequenceType) {
this.sequenceType = Optional.of(sequenceType);
return this;
}
public SubstanceNucleicAcidBuilder.Impl withSequenceType(
@NonNull CodeableConceptBuilder sequenceType) {
this.sequenceType = Optional.of(sequenceType.build());
return this;
}
/**
* @param implicitRules - A reference to a set of rules that were followed when the resource was
* constructed, and which must be understood when processing the content. Often, this is a
* reference to an implementation guide that defines the special rules along with other
* profiles etc.
*/
public SubstanceNucleicAcidBuilder.Impl withImplicitRules(@NonNull String implicitRules) {
this.implicitRules = Optional.of(implicitRules);
return this;
}
/**
* @param numberOfSubunits - The number of linear sequences of nucleotides linked through
* phosphodiester bonds shall be described. Subunits would be strands of nucleic acids that
* are tightly associated typically through Watson-Crick base pairing. NOTE: If not
* specified in the reference source, the assumption is that there is 1 subunit.
*/
public SubstanceNucleicAcidBuilder.Impl withNumberOfSubunits(
@NonNull Integer numberOfSubunits) {
this.numberOfSubunits = Optional.of(numberOfSubunits);
return this;
}
/**
* @param modifierExtension - May be used to represent additional information that is not part
* of the basic definition of the resource and that modifies the understanding of the
* element that contains it and/or the understanding of the containing element's
* descendants. Usually modifier elements provide negation or qualification. To make the use
* of extensions safe and manageable, there is a strict set of governance applied to the
* definition and use of extensions. Though any implementer is allowed to define an
* extension, there is a set of requirements that SHALL be met as part of the definition of
* the extension. Applications processing a resource are required to check for modifier
* extensions.
* Modifier extensions SHALL NOT change the meaning of any elements on Resource or
* DomainResource (including cannot change the meaning of modifierExtension itself).
*/
public SubstanceNucleicAcidBuilder.Impl withModifierExtension(
@NonNull Extension... modifierExtension) {
this.modifierExtension = Arrays.asList(modifierExtension);
return this;
}
/**
* @param modifierExtension - May be used to represent additional information that is not part
* of the basic definition of the resource and that modifies the understanding of the
* element that contains it and/or the understanding of the containing element's
* descendants. Usually modifier elements provide negation or qualification. To make the use
* of extensions safe and manageable, there is a strict set of governance applied to the
* definition and use of extensions. Though any implementer is allowed to define an
* extension, there is a set of requirements that SHALL be met as part of the definition of
* the extension. Applications processing a resource are required to check for modifier
* extensions.
*
Modifier extensions SHALL NOT change the meaning of any elements on Resource or
* DomainResource (including cannot change the meaning of modifierExtension itself).
*/
public SubstanceNucleicAcidBuilder.Impl withModifierExtension(
@NonNull Collection modifierExtension) {
this.modifierExtension = Collections.unmodifiableCollection(modifierExtension);
return this;
}
public SubstanceNucleicAcidBuilder.Impl withModifierExtension(
@NonNull ExtensionBuilder... modifierExtension) {
this.modifierExtension =
Arrays.stream(modifierExtension).map(e -> e.build()).collect(toList());
return this;
}
/**
* @param areaOfHybridisation - The area of hybridisation shall be described if applicable for
* double stranded RNA or DNA. The number associated with the subunit followed by the number
* associated to the residue shall be specified in increasing order. The underscore “” shall
* be used as separator as follows: “Subunitnumber Residue”.
*/
public SubstanceNucleicAcidBuilder.Impl withAreaOfHybridisation(
@NonNull String areaOfHybridisation) {
this.areaOfHybridisation = Optional.of(areaOfHybridisation);
return this;
}
/** @param oligoNucleotideType - (TBC). */
public SubstanceNucleicAcidBuilder.Impl withOligoNucleotideType(
@NonNull CodeableConcept oligoNucleotideType) {
this.oligoNucleotideType = Optional.of(oligoNucleotideType);
return this;
}
public SubstanceNucleicAcidBuilder.Impl withOligoNucleotideType(
@NonNull CodeableConceptBuilder oligoNucleotideType) {
this.oligoNucleotideType = Optional.of(oligoNucleotideType.build());
return this;
}
/**
* @param subunit - Subunits are listed in order of decreasing length; sequences of the same
* length will be ordered by molecular weight; subunits that have identical sequences will
* be repeated multiple times.
*/
public SubstanceNucleicAcidBuilder.Impl withSubunit(
@NonNull SubstanceNucleicAcid.Subunit... subunit) {
this.subunit = Arrays.asList(subunit);
return this;
}
/**
* @param subunit - Subunits are listed in order of decreasing length; sequences of the same
* length will be ordered by molecular weight; subunits that have identical sequences will
* be repeated multiple times.
*/
public SubstanceNucleicAcidBuilder.Impl withSubunit(
@NonNull Collection subunit) {
this.subunit = Collections.unmodifiableCollection(subunit);
return this;
}
public SubstanceNucleicAcidBuilder.Impl withSubunit(
@NonNull SubstanceNucleicAcid_SubunitBuilder... subunit) {
this.subunit = Arrays.stream(subunit).map(e -> e.build()).collect(toList());
return this;
}
public SubstanceNucleicAcidBuilder.Impl withoutMeta() {
this.meta = Optional.empty();
return this;
}
public SubstanceNucleicAcid build() {
return new SubstanceNucleicAcid(
OptionConverters.toScala(id),
OptionConverters.toScala(meta),
OptionConverters.toScala(text),
OptionConverters.toScala(language),
contained.stream().collect(new LitSeqJCollector<>()),
extension.stream().collect(new LitSeqJCollector<>()),
OptionConverters.toScala(sequenceType),
OptionConverters.toScala(implicitRules),
OptionConverters.toScala(numberOfSubunits.map(x -> (Object) x)),
modifierExtension.stream().collect(new LitSeqJCollector<>()),
OptionConverters.toScala(areaOfHybridisation),
OptionConverters.toScala(oligoNucleotideType),
subunit.stream().collect(new LitSeqJCollector<>()),
LitUtils.emptyMetaElMap());
}
}
}