com.bigdata.rdf.sail.webapp.BigdataRDFServlet Maven / Gradle / Ivy
/**
Copyright (C) SYSTAP, LLC DBA Blazegraph 2006-2016. All rights reserved.
Contact:
SYSTAP, LLC DBA Blazegraph
2501 Calvert ST NW #106
Washington, DC 20008
[email protected]
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; version 2 of the License.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with this program; if not, write to the Free Software
Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
*/
/*
* Created on Apr 13, 2011
*/
package com.bigdata.rdf.sail.webapp;
import java.io.IOException;
import java.io.OutputStream;
import java.io.PipedInputStream;
import java.io.PipedOutputStream;
import java.io.PrintWriter;
import java.io.StringWriter;
import java.io.UnsupportedEncodingException;
import java.io.Writer;
import java.net.URLDecoder;
import java.util.Collections;
import java.util.Enumeration;
import java.util.HashMap;
import java.util.Iterator;
import java.util.List;
import java.util.Map;
import java.util.Properties;
import javax.servlet.Servlet;
import javax.servlet.http.HttpServletRequest;
import javax.servlet.http.HttpServletResponse;
import org.apache.log4j.Logger;
import org.openrdf.model.Graph;
import org.openrdf.model.Resource;
import org.openrdf.model.Statement;
import org.openrdf.model.Value;
import org.openrdf.model.impl.URIImpl;
import org.openrdf.query.MalformedQueryException;
import org.openrdf.rio.RDFFormat;
import org.openrdf.rio.RDFHandlerException;
import org.openrdf.rio.RDFWriter;
import org.openrdf.rio.RDFWriterFactory;
import org.openrdf.rio.RDFWriterRegistry;
import com.bigdata.journal.IAtomicStore;
import com.bigdata.rdf.properties.PropertiesFormat;
import com.bigdata.rdf.properties.PropertiesWriter;
import com.bigdata.rdf.properties.PropertiesWriterRegistry;
import com.bigdata.rdf.rules.ConstraintViolationException;
import com.bigdata.rdf.sail.webapp.client.EncodeDecodeValue;
import com.bigdata.rdf.sparql.ast.QuadsOperationInTriplesModeException;
import com.bigdata.util.InnerCause;
/**
* Abstract base class for {@link Servlet}s which interact with the bigdata RDF
* data and/or SPARQL query layers.
*
* @author Bryan Thompson
*/
abstract public class BigdataRDFServlet extends BigdataServlet {
/**
*
*/
private static final long serialVersionUID = 1L;
static private final transient Logger log = Logger.getLogger(BigdataRDFServlet.class);
/**
* The name of the UTF-8 character encoding.
*/
protected static final String UTF8 = "UTF-8";
protected static final String NA = "N/A";
/**
* A SPARQL results set in XML.
*
* @see http://www.w3.org/TR/rdf-sparql-XMLres/
*/
static public final transient String MIME_SPARQL_RESULTS_XML = "application/sparql-results+xml";
/**
* A SPARQL results set in JSON.
*
* @see http://www.w3.org/TR/rdf-sparql-json-res/
*/
static public final transient String MIME_SPARQL_RESULTS_JSON = "application/sparql-results+json";
/**
* RDF/XML.
*/
static public final transient String MIME_RDF_XML = "application/rdf+xml";
public static final String MIME_JSON = "application/json";
public static final String MIME_SPARQL_QUERY = "application/sparql-query";
public static final String MIME_SPARQL_UPDATE = "application/sparql-update";
public static final String OUTPUT_FORMAT_QUERY_PARAMETER = "format";
public static final String OUTPUT_FORMAT_JSON = "sparql-results+json";
public static final String OUTPUT_FORMAT_XML = "sparql-results+xml";
public static final String OUTPUT_FORMAT_JSON_SHORT = "json";
public static final String OUTPUT_FORMAT_XML_SHORT = "xml";
/*
* There are cases when a default namespace exists, but has not been
* selected that the workbench will pass the name "undefined".
*/
public static final String UNDEFINED_WORKBENCH_NAMESPACE = "undefined";
/**
* Flag to signify a blueprints operation.
*/
public static final transient String ATTR_BLUEPRINTS = "blueprints";
/**
*
*/
public BigdataRDFServlet() {
}
// /**
// * {@inheritDoc}
// *
// * Note: Overridden to support read-only deployments.
// *
// * @see SparqlEndpointConfig#readOnly
// * @see ConfigParams#READ_ONLY
// */
// @Override
// static boolean isWritable(final HttpServletRequest req,
// final HttpServletResponse resp) throws IOException {
//
// if(getConfig().readOnly) {
//
// buildResponse(resp, HTTP_METHOD_NOT_ALLOWED, MIME_TEXT_PLAIN,
// "Not writable.");
//
// // Not writable. Response has been committed.
// return false;
//
// }
//
// return super.isWritable(req, resp);
//
// }
/**
* Best effort to write the stack trace onto the output stream so it will
* show up in the HTTP response. This code path should be used iff we have
* already begun writing the response. Otherwise, an HTTP error status
* should be used instead. REST API methods that have defined HTTP status
* codes (e.g., for {@link HttpServletResponse#SC_BAD_REQUEST}) should
* verify the request before proceeding in order to satisify their API
* semantics.
*
* This method is invoked as follows:
*
*
* launderThrowable(...)
*
*
* This method MUST be invoked from the top-level where the request is
* handled. The servlet container may ABORT the connection if there is an
* attempt to write onto a closed response. This can cause EOF errors in the
* client.
*
* @param t
* The thrown error.
* @param os
* The stream on which the response will be written.
* @param queryStr
* The SPARQL Query -or- SPARQL Update command (if available)
* -or- a summary of the REST API command -or- an empty string if
* nothing else is more appropriate.
*
* @see LaunderThrowable
* should never throw an exception
*/
public static void launderThrowable(final Throwable t,
final HttpServletResponse resp, final String queryStr) {
final boolean isQuery = queryStr != null && queryStr.length() > 0;
try {
// log an error for the service.
log.error("cause=" + t + (isQuery ? ", query=" + queryStr : ""), t);
} finally {
// ignore any problems here.
}
if (resp == null) {
// Nothing can be done.
return;
}
if (!resp.isCommitted()) {
/*
* Set appropriate status code.
*
* Note: A committed response has already had its status code and
* headers written.
*/
if (InnerCause.isInnerCause(t, DatasetNotFoundException.class)) {
/*
* The addressed KB does not exist.
*/
resp.setStatus(HttpServletResponse.SC_NOT_FOUND);
resp.setContentType(MIME_TEXT_PLAIN);
} else if (InnerCause.isInnerCause(t,
ConstraintViolationException.class)) {
/*
* A constraint violation is a bad request (the data violates
* the rules) not a server error.
*/
resp.setStatus(HttpServletResponse.SC_BAD_REQUEST);
resp.setContentType(MIME_TEXT_PLAIN);
} else if (InnerCause
.isInnerCause(t, MalformedQueryException.class)) {
/*
* Send back a BAD REQUEST (400) along with the text of the
* syntax error message.
*
* TODO Write unit test for 400 response for bad client request.
*/
resp.setStatus(HttpServletResponse.SC_BAD_REQUEST);
resp.setContentType(MIME_TEXT_PLAIN);
} else if (InnerCause.isInnerCause(t,
QuadsOperationInTriplesModeException.class)) {
/*
* Nice error when attempting to use quads data in a triples only
* mode.
*
* @see #1086 Loading quads data into a triple store should strip
* out the context
*/
resp.setStatus(HttpServletResponse.SC_BAD_REQUEST);
resp.setContentType(MIME_TEXT_PLAIN);
} else if (InnerCause.isInnerCause(t, HttpOperationException.class)) {
/*
* An AbstractRestApiTask failed and throw out a typed exception to
* avoid joining a commit group.
*
* TODO The queryStr is ignored on this code path. Review the places
* where the HttpOperationException is thrown and standardize the
* information contained in its [content] as we have already done
* for the [queryStr].
*/
final HttpOperationException ex = (HttpOperationException) InnerCause
.getInnerCause(t, HttpOperationException.class);
resp.setStatus(ex.status);
resp.setContentType(ex.mimeType);
try {
final Writer w = resp.getWriter();
if (ex.content != null)
w.write(ex.content); // write content iff given.
w.flush(); // Commit the response.
} catch (IOException ex2) {
// ignore any problems here.
}
return;
} else {
// Internal server error.
resp.setStatus(HttpServletResponse.SC_INTERNAL_SERVER_ERROR);
resp.setContentType(MIME_TEXT_PLAIN);
}
}
/*
* Attempt to write the stack trace on the response.
*
* Note: If the OutputStream (or Writer) has already been closed then an
* IOException is caught and ignored.
*
* Note: If the PrintWriter was already requested, then we use it directly
* rather than the OutputStream. This is due to the servlet API which will
* not allow us to obtain the OutputStream if we have already obtained the
* Writer. Some of the response handling for our servlets use the Writer
* (e.g., reportMutationCount()) so this happens if there is a problem
* while using the writer. Of course, that also makes it likely that we
* will not be able to inform the client of the error.
*/
{
OutputStream os = null;
PrintWriter w = null;
try {
try {
// first, assume OutputStream is available.
os = resp.getOutputStream();
w = new PrintWriter(os);
} catch(IllegalStateException ex) {
// Writer was already request, so we need to use it instead.
w = resp.getWriter();
}
if (queryStr != null) {
/*
* Write the query onto the output stream.
*/
w.write(queryStr);
w.write("\n");
}
/*
* Write the stack trace onto the output stream.
*/
t.printStackTrace(w);
w.flush(); // flush the writer.
if (os != null) {
os.flush(); // flush the output stream.
}
} catch (IOException ex) {
// Could not write on output stream.
} finally {
// ignore any problems here.
}
if (w != null) {
try {
// ensure writer is closed.
w.close();
} catch (Throwable t2) {
// ignore any problems here.
}
}
if (os != null) {
try {
// ensure output stream is closed.
os.close();
} catch (Throwable t2) {
// ignore any problems here.
}
}
}
/*
* Nothing is thrown.
*/
}
/**
* Return the timestamp which will be used to execute the query. The uri
* query parameter timestamp may be used to communicate the
* desired commit time against which the query will be issued. If that uri
* query parameter is not given then the default configured commit time will
* be used. Applications may create protocols for sharing interesting commit
* times as reported by {@link IAtomicStore#commit()} or by a distributed
* data loader (for scale-out).
*
* @see QueryServlet#ATTR_TIMESTAMP;
*/
protected long getTimestamp(final HttpServletRequest req) {
final String timestamp = req.getParameter(QueryServlet.ATTR_TIMESTAMP);
if (timestamp == null) {
return getConfig(getServletContext()).timestamp;
}
return Long.valueOf(timestamp);
}
/**
* Return the namespace which will be used to execute the query. The
* namespace is represented by the first component of the URI. If there is
* no namespace, then return the configured default namespace.
*
* @return The namespace.
*
* @see
* Missing URL encoding in RemoteRepositoryManager
*/
protected String getNamespace(final HttpServletRequest req) {
final String uri = req.getRequestURI();
final int snmsp = uri.indexOf("/namespace/");
if (snmsp == -1) {
String s = req.getParameter(BigdataRDFContext.NAMESPACE);
if (s != null) {
s = s.trim();
if (s.length() > 0) {
// Specified as a query parameter.
return s;
}
}
// use the default namespace.
return getConfig(getServletContext()).namespace;
}
// locate the next "/" in the URI path.
final int beginIndex = uri.indexOf('/', snmsp + 1/* fromIndex */);
// locate the next "/" in the URI path.
int endIndex = uri.indexOf('/', beginIndex + 1/* fromIndex */);
if (endIndex == -1) {
// use the rest of the URI.
endIndex = uri.length();
}
// return the namespace.
final String t = uri.substring(beginIndex + 1, endIndex);
String namespace;
try {
namespace = URLDecoder.decode(t, UTF8);
} catch (UnsupportedEncodingException e) {
throw new RuntimeException(e);
}
/*
* Handle the case where the Workbench sends undefined in the query string.
* This will not affect a user explicitly using the namespace named
* undefined. [email protected]
*/
if(this.UNDEFINED_WORKBENCH_NAMESPACE.equals(namespace))
{
namespace = getConfig(getServletContext()).namespace;
}
return namespace;
}
/**
* Factory for the {@link PipedInputStream}.
*/
final static protected PipedInputStream newPipedInputStream(
final PipedOutputStream os) throws IOException {
return new PipedInputStream(os);
}
/**
* Report that a namespace is not found. The namespace is extracted from the
* {@link HttpServletRequest}.
*/
protected void buildAndCommitNamespaceNotFoundResponse(
final HttpServletRequest req, final HttpServletResponse resp)
throws IOException {
buildAndCommitResponse(resp, HttpServletResponse.SC_NOT_FOUND,
MIME_TEXT_PLAIN, "Not found: namespace=" + getNamespace(req)
// +", timestamp="+getTimestamp(req)
);
}
/**
* Report an access path range count and elapsed time back to the user agent.
*
* @param resp
* The response.
* @param rangeCount
* The mutation count.
* @param elapsed
* The elapsed time (milliseconds).
*
* @throws IOException
*/
static protected void buildAndCommitRangeCountResponse(
final HttpServletResponse resp, final long rangeCount,
final long elapsed) throws IOException {
final StringWriter w = new StringWriter();
final XMLBuilder t = new XMLBuilder(w);
t.root("data").attr("rangeCount", rangeCount)
.attr("milliseconds", elapsed).close();
buildAndCommitResponse(resp, HTTP_OK, MIME_APPLICATION_XML, w.toString());
}
/**
* Report an boolean response and elapsed time back to the user agent. The
* response is an XML document as follows.
*
*
*
*
*
* where result is either "true" or "false";
* where elapsed is the elapsed time in milliseconds for the request.
*
* @param resp
* The response.
* @param result
* The outcome of the request.
* @param elapsed
* The elapsed time (milliseconds).
*
* @throws IOException
*/
static protected void buildAndCommitBooleanResponse(
final HttpServletResponse resp, final boolean result,
final long elapsed) throws IOException {
final StringWriter w = new StringWriter();
final XMLBuilder t = new XMLBuilder(w);
t.root("data").attr("result", result).attr("milliseconds", elapsed)
.close();
buildAndCommitResponse(resp, HttpServletResponse.SC_OK,
MIME_APPLICATION_XML, w.toString());
}
/**
* Send an RDF Graph as a response using content negotiation.
*
* @param req
* @param resp
*/
static public void sendGraph(final HttpServletRequest req,
final HttpServletResponse resp, final Graph g) throws IOException {
/*
* CONNEG for the MIME type.
*/
final List acceptHeaders = Collections.list(req.getHeaders("Accept"));
final String acceptStr = ConnegUtil.getMimeTypeForQueryParameterQueryRequest(req
.getParameter(BigdataRDFServlet.OUTPUT_FORMAT_QUERY_PARAMETER),
acceptHeaders.toArray(new String[acceptHeaders.size()]));
final ConnegUtil util = new ConnegUtil(acceptStr);
// The best RDFFormat for that Accept header.
RDFFormat format = util.getRDFFormat();
if (format == null)
format = RDFFormat.RDFXML;
RDFWriterFactory writerFactory = RDFWriterRegistry.getInstance().get(
format);
if (writerFactory == null) {
if (log.isDebugEnabled()) {
log.debug("No writer for format: format=" + format
+ ", Accept=\"" + acceptStr + "\"");
}
format = RDFFormat.RDFXML;
writerFactory = RDFWriterRegistry.getInstance().get(format);
}
// if (writerFactory == null) {
//
// buildResponse(resp, HTTP_BADREQUEST, MIME_TEXT_PLAIN,
// "No writer for format: Accept=\"" + acceptStr
// + "\", format=" + format);
//
// return;
//
// }
resp.setStatus(HTTP_OK);
resp.setContentType(format.getDefaultMIMEType());
final OutputStream os = resp.getOutputStream();
try {
final RDFWriter writer = writerFactory.getWriter(os);
writer.startRDF();
final Iterator itr = g.iterator();
while (itr.hasNext()) {
final Statement stmt = itr.next();
writer.handleStatement(stmt);
}
writer.endRDF();
os.flush();
} catch (RDFHandlerException e) {
// wrap and rethrow. will be handled by launderThrowable().
throw new IOException(e);
} finally {
os.close();
}
}
/**
* Send a properties file as a response using content negotiation.
*
* @param req
* @param resp
*/
static protected void sendProperties(final HttpServletRequest req,
final HttpServletResponse resp, final Properties properties)
throws IOException {
/*
* CONNEG for the MIME type.
*/
final List acceptHeaders = Collections.list(req.getHeaders("Accept"));
final String acceptStr = ConnegUtil.getMimeTypeForQueryParameterQueryRequest(req
.getParameter(BigdataRDFServlet.OUTPUT_FORMAT_QUERY_PARAMETER),
acceptHeaders.toArray(new String[acceptHeaders.size()]));
final ConnegUtil util = new ConnegUtil(acceptStr);
// The best format for that Accept header.
PropertiesFormat format = util.getPropertiesFormat();
if (format == null)
format = PropertiesFormat.XML;
resp.setStatus(HTTP_OK);
resp.setContentType(format.getDefaultMIMEType());
final OutputStream os = resp.getOutputStream();
try {
final PropertiesWriter writer = PropertiesWriterRegistry
.getInstance().get(format).getWriter(os);
writer.write(properties);
os.flush();
} finally {
os.close();
}
}
/**
* Return true if the Content-disposition header
* should be set to indicate that the response body should be handled as an
* attachment rather than presented inline. This is just a hint to the user
* agent. How the user agent handles this hint is up to it.
*
* @param mimeType
* The mime type.
*
* @return true if it should be handled as an attachment.
*/
protected static boolean isAttachment(final String mimeType) {
if(mimeType.equals(MIME_TEXT_PLAIN)) {
return false;
} else if(mimeType.equals(MIME_SPARQL_RESULTS_XML)) {
return false;
} else if(mimeType.equals(MIME_SPARQL_RESULTS_JSON)) {
return false;
} else if(mimeType.equals(MIME_APPLICATION_XML)) {
return false;
}
return true;
}
/**
* Convert an array of URI strings to an array of URIs.
*/
static protected Resource[] toURIs(final String[] s) {
if (s == null)
return null;
if (s.length == 0)
return new Resource[0];
final Resource[] uris = new Resource[s.length];
for (int i = 0; i < s.length; i++) {
uris[i] = new URIImpl(s[i]);
}
return uris;
}
/**
* Parses query parameter bindings for validity to provide client with
* meaningful response.
*
* @param req
* @param resp
*
* @return parsed bindings -or- null if there was an error
* processing the bindings, in which case the response was already
* committed.
*
* @throws IOException
*/
protected Map parseBindings(final HttpServletRequest req,
final HttpServletResponse resp) throws IOException {
final Enumeration parameterNames = req.getParameterNames();
final StringBuilder sb = new StringBuilder();
final Map result = new HashMap<>();
while (parameterNames.hasMoreElements()) {
final String param = parameterNames.nextElement();
if (param.startsWith("$")) {
final String name = param.substring(1);
final String valueStr = req.getParameter(param);
if (valueStr == null || valueStr.isEmpty()) {
sb.append("Invalid binding ").append(name)
.append(" with no value ").append("\n");
} else {
try {
final Value value = EncodeDecodeValue.decodeValue(valueStr);
result.put(name, value);
} catch (Exception e) {
sb.append("Invalid binding ").append(name)
.append(" with value ").append(valueStr)
.append(": ").append(e.getMessage())
.append("\n");
}
}
}
}
if (sb.length() > 0) {
sb.append("Values should follow N-Triples representation (quoted literals or URIs)");
buildAndCommitResponse(resp, HTTP_BADREQUEST, MIME_TEXT_PLAIN,
sb.toString());
return null;
}
return result;
}
}
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