
org.snpeff.geneSets.algorithm.NoneAlgorithm Maven / Gradle / Ivy
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Variant annotation and effect prediction package.
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package org.snpeff.geneSets.algorithm;
import org.apfloat.Apfloat;
import org.snpeff.geneSets.GeneSet;
import org.snpeff.geneSets.GeneSets;
/**
* An algorithm that does nothing
*
* @author pcingola
*/
public class NoneAlgorithm extends EnrichmentAlgorithm {
public NoneAlgorithm(GeneSets geneSets) {
super(geneSets, 0);
}
/**
* Create a new gene set using all gene sets and calculate pValue
* @param geneSetList
* @return
*/
@Override
Apfloat pValue(GeneSet geneSet) {
return Apfloat.ONE;
}
}
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