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Variant annotation and effect prediction package.

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package org.snpeff.interval;

import org.snpeff.snpEffect.EffectType;

/**
 * A (putative) branch site.
 * 
 * @author pablocingolani
 */
public class SpliceSiteBranch extends SpliceSite {

	private static final long serialVersionUID = 7903892379174750342L;

	public SpliceSiteBranch() {
		super();
		type = EffectType.SPLICE_SITE_BRANCH;
	}

	public SpliceSiteBranch(Intron parent, int start, int end, boolean strandMinus, String id) {
		super(parent, start, end, strandMinus, id);
		type = EffectType.SPLICE_SITE_BRANCH;
	}

	/**
	 * These are NOT core splice sites
	 */
	@Override
	public boolean intersectsCoreSpliceSite(Marker marker) {
		return false;
	}

}