org.snpeff.snpEffect.factory.SnpEffPredictorFactoryEmbl Maven / Gradle / Ivy

Go to download

Show more of this group Show more artifacts with this name
Show all versions of SnpEff Show documentation

Variant annotation and effect prediction package.

The newest version!

package org.snpeff.snpEffect.factory;

import org.snpeff.genBank.EmblFile;
import org.snpeff.snpEffect.Config;

/**
 * This class creates a SnpEffectPredictor from an Embl file.
 *
 * @author pcingola
 */
public class SnpEffPredictorFactoryEmbl extends SnpEffPredictorFactoryFeatures {

	public static final String EXTENSION_EMBL = ".embl";

	public SnpEffPredictorFactoryEmbl(Config config) {
		super(config);
		fileName = config.getBaseFileNameGenes() + EXTENSION_EMBL;
		featuresFile = new EmblFile(fileName);
	}

	public SnpEffPredictorFactoryEmbl(Config config, String emblFileName) {
		super(config);
		fileName = emblFileName;
		featuresFile = new EmblFile(fileName);
	}
}