org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationHgvsDel Maven / Gradle / Ivy

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Variant annotation and effect prediction package.

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package org.snpeff.snpEffect.testCases.integration;

import org.junit.Test;
import org.snpeff.util.Gpr;

/**
 * Test cases for HGVS notation on insertions
 */
public class TestCasesIntegrationHgvsDel extends TestCasesIntegrationBase {

	public TestCasesIntegrationHgvsDel() {
		super();
	}

	/**
	 * This frameshift caused an exception while processing HGVS protein notation
	 */
	@Test
	public void test_01_hgvs_deletions_chr11() {
		Gpr.debug("Test");

		String genomeName = "testHg19Chr11";
		String vcf = path("test_01_hgvs_deletions_chr11.vcf");

		snpEffect(genomeName, vcf, null);

	}

}