org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationNoChange Maven / Gradle / Ivy

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Variant annotation and effect prediction package.

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package org.snpeff.snpEffect.testCases.integration;

import org.junit.Test;
import org.snpeff.util.Gpr;

/**
 * Test case where VCF entries has no sequence change (either REF=ALT or ALT=".")
 *
 * @author pcingola
 */
public class TestCasesIntegrationNoChange extends TestCasesIntegrationBase {

	public TestCasesIntegrationNoChange() {
		super();
	}

	@Test
	public void test_01() {
		Gpr.debug("Test");
		String args[] = { "-classic", "testHg3766Chr1", path("test.no_change.vcf") };
		checkNoChange(args);
	}

	@Test
	public void test_02() {
		Gpr.debug("Test");
		String args[] = { "-classic", "testHg3766Chr1", path("test.no_change_02.vcf") };
		checkNoChange(args);
	}

}