org.snpeff.snpEffect.testCases.unity.TestCasesIntervalTreeArray Maven / Gradle / Ivy

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Variant annotation and effect prediction package.

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package org.snpeff.snpEffect.testCases.unity;

import org.snpeff.interval.Markers;
import org.snpeff.interval.tree.IntervalTreeArray;
import org.snpeff.interval.tree.Itree;

/**
 * Test case for interval tree structure
 */
public class TestCasesIntervalTreeArray extends TestCasesIntervalTree {

	@Override
	protected Itree newItree(Markers markers) {
		IntervalTreeArray ita = new IntervalTreeArray(markers);
		ita.setVerbose(verbose);
		ita.setDebug(debug);
		return ita;
	}

}