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com.fulcrumgenomics.cmdline.FgBioTool.scala Maven / Gradle / Ivy
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/*
* The MIT License
*
* Copyright (c) 2016 Fulcrum Genomics LLC
*
* Permission is hereby granted, free of charge, to any person obtaining a copy
* of this software and associated documentation files (the "Software"), to deal
* in the Software without restriction, including without limitation the rights
* to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
* copies of the Software, and to permit persons to whom the Software is
* furnished to do so, subject to the following conditions:
*
* The above copyright notice and this permission notice shall be included in
* all copies or substantial portions of the Software.
*
* THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
* IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
* FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
* AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
* LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
* OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
* THE SOFTWARE.
*/
package com.fulcrumgenomics.cmdline
import com.fulcrumgenomics.cmdline.FgBioMain.FailureException
import com.fulcrumgenomics.commons.util.LazyLogging
import com.fulcrumgenomics.sopt.cmdline.ValidationException
/** All fgbio tools should extend this. */
trait FgBioTool extends LazyLogging {
def execute(): Unit
/** Fail with just an exit code. */
def fail(exit: Int) = throw new FailureException(exit=exit)
/** Fail with the default exit code and a message. */
def fail(message: String) = throw new FailureException(message=Some(message))
/** Fail with a specific error code and message. */
def fail(exit: Int, message: String) = throw new FailureException(exit=exit, message=Some(message))
/** Generates a new validation exception with the given message. */
def invalid(message: String) = throw new ValidationException(message)
/** Generates a validation exception if the test value is false. */
def validate(test: Boolean, message: => String) = if (!test) throw new ValidationException(message)
}
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