org.semanticweb.owlapi.util.OWLEntityRenamer Maven / Gradle / Ivy
/*
* This file is part of the OWL API.
*
* The contents of this file are subject to the LGPL License, Version 3.0.
*
* Copyright (C) 2011, The University of Manchester
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
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* This program is distributed in the hope that it will be useful,
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* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with this program. If not, see http://www.gnu.org/licenses/.
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*
* Alternatively, the contents of this file may be used under the terms of the Apache License, Version 2.0
* in which case, the provisions of the Apache License Version 2.0 are applicable instead of those above.
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* Copyright 2011, University of Manchester
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
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* http://www.apache.org/licenses/LICENSE-2.0
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package org.semanticweb.owlapi.util;
import java.util.ArrayList;
import java.util.HashMap;
import java.util.HashSet;
import java.util.List;
import java.util.Map;
import java.util.Set;
import org.semanticweb.owlapi.model.AddAxiom;
import org.semanticweb.owlapi.model.IRI;
import org.semanticweb.owlapi.model.OWLAxiom;
import org.semanticweb.owlapi.model.OWLEntity;
import org.semanticweb.owlapi.model.OWLOntology;
import org.semanticweb.owlapi.model.OWLOntologyChange;
import org.semanticweb.owlapi.model.OWLOntologyManager;
import org.semanticweb.owlapi.model.RemoveAxiom;
/**
* Author: Matthew Horridge
* The University Of Manchester
* Bio-Health Informatics Group
* Date: 11-Dec-2006
*
* Renames entities that have a particular IRI. Entities with the specified
* IRI are renamed regardless of whether they are classes, object properties,
* data properties, individuals or data types.
*/
public class OWLEntityRenamer {
private final OWLOntologyManager owlOntologyManager;
private final Set ontologies;
/**
* @param owlOntologyManager the ontology manager to use
* @param ontologies the ontologies to use
*/
public OWLEntityRenamer(OWLOntologyManager owlOntologyManager, Set ontologies) {
this.owlOntologyManager = owlOntologyManager;
this.ontologies = ontologies;
}
/**
* Changes a IRI for another IRI. This creates the appropriate changes to be
* applied in order to change a IRI.
* @param uri The IRI to be changed
* @param newIRI The IRI that the IRI should be changed to.
* @return A list of ontology changes that should be applied to change the
* specified IRI.
*/
public List changeIRI(IRI uri, IRI newIRI) {
Map uriMap = new HashMap();
uriMap.put(uri, newIRI);
List changes = new ArrayList();
OWLObjectDuplicator dup = new OWLObjectDuplicator(owlOntologyManager.getOWLDataFactory(), uriMap);
for (OWLOntology ont : ontologies) {
fillListWithTransformChanges(changes, getAxioms(ont, uri), ont, dup);
}
return changes;
}
/**
* Changes the IRI of an entity for another IRI.
* @param entity The entity whose IRI is to be changed.
* @param newIRI The new IRI
* @return A list of ontology changes that should be applied to change the
* specified entity IRI.
*/
public List changeIRI(OWLEntity entity, IRI newIRI) {
Map iriMap = new HashMap();
iriMap.put(entity, newIRI);
List changes = new ArrayList();
OWLObjectDuplicator duplicator = new OWLObjectDuplicator(iriMap, owlOntologyManager.getOWLDataFactory());
for (OWLOntology ont : ontologies) {
fillListWithTransformChanges(changes, getAxioms(ont, entity), ont, duplicator);
}
return changes;
}
/**
* @param entity2IRIMap map of IRIs to rename
* @return list of changes
*/
public List changeIRI(Map entity2IRIMap) {
List changes = new ArrayList();
OWLObjectDuplicator duplicator = new OWLObjectDuplicator(entity2IRIMap, owlOntologyManager.getOWLDataFactory());
for (OWLOntology ont : ontologies) {
for (OWLEntity ent : entity2IRIMap.keySet()) {
fillListWithTransformChanges(changes, getAxioms(ont, ent), ont, duplicator);
}
}
return changes;
}
private static Set getAxioms(OWLOntology ont, OWLEntity entity) {
Set axioms = ont.getReferencingAxioms(entity);
axioms.addAll(ont.getDeclarationAxioms(entity));
axioms.addAll(ont.getAnnotationAssertionAxioms(entity.getIRI()));
return axioms;
}
private Set getAxioms(OWLOntology ont, IRI iri) {
Set axioms = new HashSet();
axioms.addAll(ont.getReferencingAxioms(owlOntologyManager.getOWLDataFactory().getOWLClass(iri)));
axioms.addAll(ont.getReferencingAxioms(owlOntologyManager.getOWLDataFactory().getOWLObjectProperty(iri)));
axioms.addAll(ont.getReferencingAxioms(owlOntologyManager.getOWLDataFactory().getOWLDataProperty(iri)));
axioms.addAll(ont.getReferencingAxioms(owlOntologyManager.getOWLDataFactory().getOWLNamedIndividual(iri)));
axioms.addAll(ont.getReferencingAxioms(owlOntologyManager.getOWLDataFactory().getOWLDatatype(iri)));
axioms.addAll(ont.getReferencingAxioms(owlOntologyManager.getOWLDataFactory().getOWLAnnotationProperty(iri)));
axioms.addAll(ont.getAnnotationAssertionAxioms(iri));
return axioms;
}
/**
* Fills a list with ontology changes which will replace a set of axioms with
* duplicated/transformed axioms.
* @param changes A list that will be filled with ontology changes which will remove the
* specified axioms from the specified ontology, and add the duplicated/transformed version
* @param axioms The axioms to be duplicated/transformed
* @param ont The ontology to which the changed should be applied
* @param duplicator The duplicator that will do the duplicating
*/
private static void fillListWithTransformChanges(List changes, Set axioms, OWLOntology ont, OWLObjectDuplicator duplicator) {
for (OWLAxiom ax : axioms) {
changes.add(new RemoveAxiom(ont, ax));
OWLAxiom dupAx = duplicator.duplicateObject(ax);
changes.add(new AddAxiom(ont, dupAx));
}
}
}