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/*
 * This file is part of the OWL API.
 *
 * The contents of this file are subject to the LGPL License, Version 3.0.
 *
 * Copyright (C) 2011, The University of Manchester
 *
 * This program is free software: you can redistribute it and/or modify
 * it under the terms of the GNU General Public License as published by
 * the Free Software Foundation, either version 3 of the License, or
 * (at your option) any later version.
 *
 * This program is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 * GNU General Public License for more details.
 *
 * You should have received a copy of the GNU General Public License
 * along with this program.  If not, see http://www.gnu.org/licenses/.
 *
 *
 * Alternatively, the contents of this file may be used under the terms of the Apache License, Version 2.0
 * in which case, the provisions of the Apache License Version 2.0 are applicable instead of those above.
 *
 * Copyright 2011, University of Manchester
 *
 * Licensed under the Apache License, Version 2.0 (the "License");
 * you may not use this file except in compliance with the License.
 * You may obtain a copy of the License at
 *
 * http://www.apache.org/licenses/LICENSE-2.0
 *
 * Unless required by applicable law or agreed to in writing, software
 * distributed under the License is distributed on an "AS IS" BASIS,
 * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 * See the License for the specific language governing permissions and
 * limitations under the License.
 */

package org.coode.xml;

import java.util.HashSet;
import java.util.Map;
import java.util.Set;

import org.semanticweb.owlapi.io.XMLUtils;
import org.semanticweb.owlapi.model.AxiomType;
import org.semanticweb.owlapi.model.IRI;
import org.semanticweb.owlapi.model.OWLEntity;
import org.semanticweb.owlapi.model.OWLNamedObject;
import org.semanticweb.owlapi.model.OWLOntology;
import org.semanticweb.owlapi.model.OWLOntologyFormat;
import org.semanticweb.owlapi.model.OWLOntologyManager;
import org.semanticweb.owlapi.util.NamespaceUtil;
import org.semanticweb.owlapi.vocab.DublinCoreVocabulary;
import org.semanticweb.owlapi.vocab.Namespaces;
import org.semanticweb.owlapi.vocab.PrefixOWLOntologyFormat;


/**
 * Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: * 30-May-2006

*

* [email protected]
www.cs.man.ac.uk/~horridgm

*

* Developed as part of the CO-ODE project http://www.co-ode.org *

*

* The OWLOntologyNamespaceManager wraps a NamespaceManager (OWLOntologyFormat). In the case where the appropriate * prefixes and mappings don't exist in the NamespaceManager (OWLOntologyFormat) this manager will create them. */ @SuppressWarnings("javadoc") public class OWLOntologyXMLNamespaceManager extends XMLWriterNamespaceManager { private OWLOntology ontology; private NamespaceUtil namespaceUtil; private OWLOntologyFormat ontologyFormat; public OWLOntologyXMLNamespaceManager(OWLOntologyManager man, OWLOntology ontology) { this(ontology, man.getOntologyFormat(ontology)); } public OWLOntologyXMLNamespaceManager(OWLOntology ontology, OWLOntologyFormat format) { super(getDefaultNamespace(ontology, format)); this.ontology = ontology; namespaceUtil = new NamespaceUtil(); ontologyFormat = format; addWellKnownNamespace("skos", Namespaces.SKOS.toString()); addWellKnownNamespace("dc", DublinCoreVocabulary.NAME_SPACE); processOntology(); } protected OWLOntology getOntology() { return ontology; } private void processOntology() { namespaceUtil = new NamespaceUtil(); if (ontologyFormat instanceof PrefixOWLOntologyFormat) { PrefixOWLOntologyFormat namespaceFormat = (PrefixOWLOntologyFormat) ontologyFormat; Map namespacesByPrefix = namespaceFormat.getPrefixName2PrefixMap(); for (String prefixName : namespacesByPrefix.keySet()) { String xmlnsPrefixName = prefixName.substring(0, prefixName.length() - 1); String xmlnsPrefix = namespacesByPrefix.get(prefixName); namespaceUtil.setPrefix(xmlnsPrefix, xmlnsPrefixName); } } if (ontology.getAxiomCount(AxiomType.SWRL_RULE) != 0) { namespaceUtil.setPrefix(Namespaces.SWRL.toString(), "swrl"); namespaceUtil.setPrefix(Namespaces.SWRLB.toString(), "swrlb"); } Set entities = getEntitiesThatRequireNamespaces(); for (OWLEntity ent : entities) { processEntity(ent); } Map ns2prefixMap = namespaceUtil.getNamespace2PrefixMap(); for (String ns : ns2prefixMap.keySet()) { if (!Namespaces.OWL11.inNamespace(ns) && !Namespaces.OWL11XML.inNamespace(ns)) { setPrefix(ns2prefixMap.get(ns), ns); } } } protected Set getEntitiesThatRequireNamespaces() { Set result = new HashSet(); result.addAll(ontology.getClassesInSignature()); result.addAll(ontology.getObjectPropertiesInSignature()); result.addAll(ontology.getDataPropertiesInSignature()); result.addAll(ontology.getIndividualsInSignature()); result.addAll(ontology.getAnnotationPropertiesInSignature()); return result; } private void processEntity(OWLNamedObject entity) { IRI iri = entity.getIRI(); processIRI(iri); } private void processIRI(IRI iri) { String ns = iri.getNamespace(); if (ns != null && !(ns.equals("") || iri.getFragment() == null)) { namespaceUtil.getPrefix(ns); } } /** * Gets a suggested default namespace bases on the ID of an ontology. If the ontology has an IRI then * this IRI will be used to suggest a default namespace, otherwise, the OWL namespace will be returned * as the default namespace * @param ontology The ontology * @return A suggested default namespace */ private static String getDefaultNamespace(OWLOntology ontology, OWLOntologyFormat format) { if(format instanceof PrefixOWLOntologyFormat) { PrefixOWLOntologyFormat prefixOWLOntologyFormat = (PrefixOWLOntologyFormat) format; String defaultPrefix = prefixOWLOntologyFormat.getDefaultPrefix(); if(defaultPrefix != null) { return defaultPrefix; } } if(ontology.getOntologyID().isAnonymous()) { // XXX What do we return here? Just return the OWL namespace for // now. return Namespaces.OWL.toString(); } else { String base = ontology.getOntologyID().getOntologyIRI().toString(); if (!base.endsWith("#") && !base.endsWith("/")) { base += "#"; } return base; } } @Override public String getQName(String name) { final String ns = XMLUtils.getNCNamePrefix(name); String fragment = XMLUtils.getNCNameSuffix(name); if (ns.equals(getDefaultNamespace())) { return fragment; } if (name.startsWith("xmlns") || name.startsWith("xml:")) { return name; } if (ns.equals("") || fragment == null || fragment.isEmpty()) { // Couldn't split return name; } String prefix = getPrefixForNamespace(ns); if (prefix != null) { if (prefix.length() > 0) { return prefix + ":" + fragment; } else { return fragment; } } else { return null; } } }





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