com.clarkparsia.pellet.owlapiv3.PelletLoader Maven / Gradle / Ivy
// Portions Copyright (c) 2006 - 2008, Clark & Parsia, LLC.
// Clark & Parsia, LLC parts of this source code are available under the terms of the Affero General Public License v3.
//
// Please see LICENSE.txt for full license terms, including the availability of proprietary exceptions.
// Questions, comments, or requests for clarification: [email protected]
//
// ---
// Portions Copyright (c) 2003 Ron Alford, Mike Grove, Bijan Parsia, Evren Sirin
// Alford, Grove, Parsia, Sirin parts of this source code are available under the terms of the MIT License.
//
// The MIT License
//
// Permission is hereby granted, free of charge, to any person obtaining a copy
// of this software and associated documentation files (the "Software"), to
// deal in the Software without restriction, including without limitation the
// rights to use, copy, modify, merge, publish, distribute, sublicense, and/or
// sell copies of the Software, and to permit persons to whom the Software is
// furnished to do so, subject to the following conditions:
//
// The above copyright notice and this permission notice shall be included in
// all copies or substantial portions of the Software.
//
// THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
// IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
// FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
// AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
// LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
// FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS
// IN THE SOFTWARE.
package com.clarkparsia.pellet.owlapiv3;
import java.util.Collection;
import java.util.Collections;
import java.util.HashMap;
import java.util.HashSet;
import java.util.LinkedHashSet;
import java.util.List;
import java.util.Map;
import java.util.Set;
import java.util.logging.Level;
import java.util.logging.Logger;
import org.mindswap.pellet.KnowledgeBase;
import org.mindswap.pellet.exceptions.InternalReasonerException;
import org.mindswap.pellet.utils.Timer;
import org.semanticweb.owlapi.model.AddAxiom;
import org.semanticweb.owlapi.model.AddImport;
import org.semanticweb.owlapi.model.AddOntologyAnnotation;
import org.semanticweb.owlapi.model.OWLAxiom;
import org.semanticweb.owlapi.model.OWLException;
import org.semanticweb.owlapi.model.OWLObject;
import org.semanticweb.owlapi.model.OWLOntology;
import org.semanticweb.owlapi.model.OWLOntologyChange;
import org.semanticweb.owlapi.model.OWLOntologyChangeVisitor;
import org.semanticweb.owlapi.model.OWLOntologyManager;
import org.semanticweb.owlapi.model.RemoveAxiom;
import org.semanticweb.owlapi.model.RemoveImport;
import org.semanticweb.owlapi.model.RemoveOntologyAnnotation;
import org.semanticweb.owlapi.model.SetOntologyID;
import aterm.ATermAppl;
/**
* Title:
*
* Description:
*
* Copyright: Copyright (c) 2007
*
* Company: Clark & Parsia, LLC.
*
* @author Evren Sirin
*/
public class PelletLoader {
public static Logger log = Logger
.getLogger( PelletLoader.class.getName() );
private KnowledgeBase kb;
// private Set loadedFiles;
private OWLOntologyManager manager;
private Set ontologies;
/**
* Flag to check if imports will be automatically loaded/unloaded
*/
private boolean processImports;
/**
* Ontologies that are loaded due to imports but they have not been included
* in an explicit load statement by the user
*/
private Set notImported;
/**
* This is the reverse mapping of imports. The key is an ontology and the
* value is a set of ontology that imports the ontology used as the key
*/
private Map> importDependencies;
private PelletVisitor visitor;
private ChangeVisitor changeVisitor = new ChangeVisitor();
private class ChangeVisitor implements OWLOntologyChangeVisitor {
private boolean reloadRequired;
public boolean isReloadRequired() {
return reloadRequired;
}
/**
* Process a change, providing a single call for common
* reset,accept,isReloadRequired pattern.
*
* @param change
* the {@link OWLOntologyChange} to process
* @return true if change is handled, false if
* a reload is required
*/
public boolean process(OWLOntologyChange change) {
this.reset();
change.accept( this );
return !isReloadRequired();
}
public void reset() {
visitor.reset();
reloadRequired = false;
}
public void visit(AddAxiom change) {
visitor.setAddAxiom( true );
change.getAxiom().accept( visitor );
reloadRequired = visitor.isReloadRequired();
}
public void visit(RemoveAxiom change) {
visitor.setAddAxiom( false );
change.getAxiom().accept( visitor );
reloadRequired = visitor.isReloadRequired();
}
public void visit(AddImport change) {
reloadRequired = getProcessImports();
}
public void visit(AddOntologyAnnotation change) {
// TODO Auto-generated method stub
}
public void visit(RemoveImport change) {
reloadRequired = getProcessImports();
}
public void visit(RemoveOntologyAnnotation change) {
// TODO Auto-generated method stub
}
public void visit(SetOntologyID change) {
// nothing to do here
}
}
public PelletLoader(KnowledgeBase kb) {
this.kb = kb;
visitor = new PelletVisitor( kb );
processImports = true;
ontologies = new HashSet();
notImported = new HashSet();
importDependencies = new HashMap>();
}
/**
* @deprecated Use {@link #getProcessImports()} instead
*/
public boolean loadImports() {
return getProcessImports();
}
/**
* @deprecated Use {@link #setProcessImports(boolean)} instead
*/
public void setLoadImports(boolean loadImports) {
setProcessImports( loadImports );
}
public boolean getProcessImports() {
return processImports;
}
public void setProcessImports(boolean processImports) {
this.processImports = processImports;
}
public void clear() {
visitor.clear();
kb.clear();
ontologies.clear();
notImported.clear();
importDependencies.clear();
// loadedFiles = new HashSet();
// loadedFiles.add( Namespaces.OWL );
// loadedFiles.add( Namespaces.RDF );
// loadedFiles.add( Namespaces.RDFS );
}
public KnowledgeBase getKB() {
return kb;
}
public void setKB(KnowledgeBase kb) {
this.kb = kb;
}
public ATermAppl term(OWLObject d) {
visitor.reset();
visitor.setAddAxiom( false );
d.accept( visitor );
ATermAppl a = visitor.result();
if( a == null )
throw new InternalReasonerException( "Cannot create ATerm from description " + d );
return a;
}
public void reload() {
log.fine( "Reloading the ontologies" );
// copy the loaded ontologies
Set notImportedOnts = new HashSet( notImported );
// clear everything
clear();
// load ontologies again
load( notImportedOnts );
}
public void load(Set ontologies) {
Timer timer = kb.timers.startTimer( "load" );
int axiomCount = 0;
Collection toBeLoaded = new LinkedHashSet();
for( OWLOntology ontology : ontologies )
axiomCount += load( ontology, false, toBeLoaded );
visitor.reset();
visitor.setAddAxiom( true );
for( OWLOntology ontology : toBeLoaded )
ontology.accept( visitor );
visitor.verify();
timer.stop();
}
private int load(OWLOntology ontology, boolean imported, Collection toBeLoaded) {
// if not imported add it to notImported set
if( !imported )
notImported.add( ontology );
// add to the loaded ontologies
boolean added = ontologies.add( ontology );
// if it was already there, nothing more to do
if( !added )
return 0;
int axiomCount = ontology.getAxioms().size();
toBeLoaded.add( ontology );
// if processing imports load the imported ontologies
if( processImports ) {
for( OWLOntology importedOnt : ontology.getImports() ) {
// load the importedOnt
axiomCount += load( importedOnt, true, toBeLoaded );
// update the import dependencies
Set importees = importDependencies.get( importedOnt );
if( importees == null ) {
importees = new HashSet();
importDependencies.put( importedOnt, importees );
}
importees.add( ontology );
}
}
return axiomCount;
}
public Set getUnsupportedAxioms() {
return visitor.getUnsupportedAxioms();
}
public void unload(Set ontologies) {
for( OWLOntology ontology : ontologies )
unload( ontology );
}
private void unload(OWLOntology ontology) {
// remove the ontology from the set
boolean removed = ontologies.remove( ontology );
// if it is not there silently return
if( !removed )
return;
// remove it from notImported set, too
notImported.remove( ontology );
// if we are processing imports we might need to unload the
// imported ontologies
if( processImports ) {
// go over the imports
for( OWLOntology importOnt : ontology.getImports() ) {
// see if the importedOnt is imported by any other ontology
Set importees = importDependencies.get( importOnt );
if( importees != null ) {
// remove the unloaded ontology from the dependencies
importees.remove( ontology );
// if nothing is left
if( importees.isEmpty() ) {
// remove the empty set from dependencies
importDependencies.remove( importOnt );
// only unload if this ontology was not loaded by the
// user explicitly
if( !notImported.contains( importOnt ) )
unload( importOnt );
}
}
}
}
}
/**
* @return Returns the loaded ontologies.
*/
public Set getOntologies() {
return Collections.unmodifiableSet( ontologies );
}
public OWLOntologyManager getManager() {
return manager;
}
public void setManager(OWLOntologyManager manager) {
this.manager = manager;
}
/**
* Apply the given changes to the Pellet KB.
*
* @param changes
* List of ontology changes to be applied
* @return true if changes applied successfully,
* false otherwise indicating a reload is required
* @throws OWLException
*/
public boolean applyChanges(List changes) {
for( OWLOntologyChange change : changes ) {
if( !ontologies.contains( change.getOntology() ) )
continue;
if( !changeVisitor.process( change ) ) {
if( log.isLoggable( Level.FINE ) )
log.fine( "Reload required by ontology change " + change );
return false;
}
}
return true;
}
}