picard.sam.util.PhysicalLocationInt Maven / Gradle / Ivy
package picard.sam.util;
import picard.PicardException;
/**
* Small class that provides access to the physical location information about a cluster.
* All values should be defaulted to -1 if unavailable. Tile should only allow
* non-zero positive integers, x and y coordinates must be non-negative.
* This is different from PhysicalLocationShort in that the x and y positions are ints, not shorts
* thus, they do not overflow within a HiSeqX tile.
*/
public class PhysicalLocationInt implements PhysicalLocation {
public short tile = -1;
public int x = -1, y = -1;
public short getReadGroup() { throw new PicardException("Not Implemented"); }
public void setReadGroup(final short readGroup) { throw new PicardException("Not Implemented"); }
public short getTile() { return tile; }
public void setTile(final short tile) { this.tile = tile; }
public int getX() { return x; }
public void setX(final int x) { this.x = x; }
public int getY() { return y; }
public void setY(final int y) { this.y = y; }
public short getLibraryId() { throw new PicardException("Not Implemented"); }
public void setLibraryId(final short libraryId) { throw new PicardException("Not Implemented"); }
}
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