picard.helpTemplates.common.html Maven / Gradle / Ivy

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A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

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<#--
        This file contains part of the theming neccesary to present PicardDocs on the Picard website. Included are the
        paths to our bootstrap assets as well as helper functions to generate relevant links. Styling is separated
        out, so pages will be minimalistic html unless replacement styling is provided.

        -->

    <#global siteRoot = "https://www.broadinstitute.org/picard/" />
    <#global guideIndex = "https://www.broadinstitute.org/picard/guide/" />
    <#global forum = "http://gatkforums.broadinstitute.org/" />

    <#macro footerInfo>
        
         Return to top
        
        See also 
        	Picard Documentation Index |
        	Tool Docs Index |
        	Support Forum
        

        Picard version ${version} built at ${timestamp}.
        <#-- closing P tag in next macro -->
    
    
    <#macro footerClose>
    	<#-- ugly little hack to enable adding tool-specific info inline -->
        
    

    <#macro getCategories groups>
        
        
        	<#assign seq = ["engine", "tools", "other", "utilities"]>
        	<#list seq as supercat>
        		
        		<#list groups?sort_by("name") as group>
        			<#if group.supercat == supercat>
						${group.name}
							
								
									<#list data as datum>
										<#if datum.group == group.name>
											
												${datum.name}