com.github.celldynamics.quimp.filesystem.converter.FormatConverterUi Maven / Gradle / Ivy
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package com.github.celldynamics.quimp.filesystem.converter;
import java.awt.BorderLayout;
import java.awt.Color;
import java.awt.FlowLayout;
import java.awt.Font;
import java.awt.GridBagConstraints;
import java.awt.GridBagLayout;
import java.awt.GridLayout;
import java.awt.Insets;
import java.awt.Window;
import java.awt.event.ActionEvent;
import java.awt.event.ActionListener;
import java.awt.event.ItemEvent;
import java.awt.event.ItemListener;
import javax.swing.BoxLayout;
import javax.swing.JButton;
import javax.swing.JCheckBox;
import javax.swing.JDialog;
import javax.swing.JPanel;
import javax.swing.JScrollPane;
import javax.swing.JSeparator;
import javax.swing.JTabbedPane;
import javax.swing.JTextPane;
import javax.swing.JToggleButton;
import javax.swing.UIManager;
import javax.swing.border.LineBorder;
import javax.swing.border.TitledBorder;
/**
* Build format converter view.
*
* Generally, {@link JCheckBox} controls are coded as group:name, where name is exactly name
* displayed in UI. These strings are stored in {@link FormatConverterModel} on each action on
* {@link JCheckBox}. {@link FormatConverterController} consumes such coded configuration performs
* requested actions. The rationale is that these strings can ba also provided from command line if
* headless mode is used.
*
* @author p.baniukiewicz
*
*/
public class FormatConverterUi extends JDialog {
private static final String FILE_PER_FRAME = "File per frame";
private static final String FILE_PER_CELL = "File per cell";
// Strings displayed at controls and also unique code stored in model (like setActionCommand)
// all lower case, name ,changing can break compatibility as these strings are supposed to be
// parameters to Formatconverter run in headless mode
static final String STATS_FLUORES = "stats:fluores";
static final String STATS_GEOMETRIC = "stats:geometric";
static final String STATS_Q11 = "stats:q11 files";
static final String ECMM_CENTROID = "ecmm:centroid";
static final String ECCM_OUTLINES = "ecmm:outlines";
static final String BOA_CENTROID = "boa:centroid";
static final String BOA_SNAKES = "boa:snakes";
static final String MAP_FLUORES = "map:fluores";
static final String MAP_CONVEXITY = "map:convexity";
static final String MAP_MOTILITY = "map:motility";
static final String MAP_Y_COORDS = "map:xcoords";
static final String MAP_X_COORDS = "map:ycoords";
static final String MAP_ORIGIN = "map:origin";
static final String MAP_COORD = "map:coord";
/**
* serialVersionUID.
*/
private static final long serialVersionUID = 4700215468821831701L;
private JButton generateButton;
private JCheckBox chckbxCentroid;
private JCheckBox chckbxSnakes;
private JCheckBox chckbxCentroidEcmm;
private JCheckBox chckbxGeometric;
private JCheckBox chckbxFluoresStat;
private JCheckBox chckbxX;
private JCheckBox chckbxOrigin;
private JCheckBox chckbxCoord;
private JCheckBox chckbxFluo;
private JCheckBox chckbxY;
private JCheckBox chckbxMotility;
private JCheckBox chckbxConvexity;
private JToggleButton btnEcmm;
private JToggleButton btnBoa;
private JToggleButton btnRawStats;
private JToggleButton btnMaps;
private JButton cancelButton;
private JPanel okcancelPanel;
private JPanel loadPanel;
private JButton btnLoad;
private JButton btnConvertAny;
private JTabbedPane tabbedPane;
private JTextPane infoText;
private JScrollPane scrollPane;
private JCheckBox chckbxOutlinesEcmm;
private JPanel multifilePanel;
private JCheckBox chckbxMultiFileOutput;
private JPanel panel1;
private JToggleButton btnQ11Stats;
private JPanel statsQ11Panel;
private JCheckBox chckbxQ11Stat;
/**
* Build checkbox with link to model.
*
* @param text text of checkbox
* @param model reference to {@link FormatConverterModel}
* @return checkbox object
* @wbp.factory
* @wbp.factory.parameter.source text "fluores"
* @wbp.factory.parameter.source model model
*/
public static JCheckBox createJCheckBox(String text, FormatConverterModel model) {
String[] names = text.split(":");
JCheckBox checkBox = new JCheckBox(names[1]);
checkBox.setSelected(false);
checkBox.addItemListener(new ItemListener() { // itemlistener react on setSelected(true)
@Override
public void itemStateChanged(ItemEvent e) {
if (checkBox.isSelected()) { // add to list
model.getStatus().add(text);
} else {
model.getStatus().remove(text); // remove from list
}
}
});
return checkBox;
}
/**
* Default constructor - for tests and WindowCreator. Object should be initialized with
* {@link #FormatConverterUi(FormatConverterModel)}.
*/
public FormatConverterUi() {
this(new FormatConverterModel());
setDefaultCloseOperation(JDialog.DISPOSE_ON_CLOSE);
}
/**
* Create the dialog. Proer constructor for normal use.
*
* @param model model class for this view
*/
public FormatConverterUi(FormatConverterModel model) {
super((Window) null);
// try {
// UIManager.setLookAndFeel(UIManager.getSystemLookAndFeelClassName());
// } catch (ClassNotFoundException | InstantiationException | IllegalAccessException
// | UnsupportedLookAndFeelException e) {
// e.printStackTrace();
// }
setTitle("Format Converter");
setBounds(100, 100, 568, 307);
getContentPane().setLayout(new BorderLayout());
{
tabbedPane = new JTabbedPane(JTabbedPane.TOP);
tabbedPane.setBorder(null);
tabbedPane.setBackground(UIManager.getColor("Panel.background"));
getContentPane().add(tabbedPane, BorderLayout.CENTER);
{
JPanel panel = new JPanel();
panel.setBorder(null);
tabbedPane.addTab("Conversions", null, panel, null);
tabbedPane.setBackgroundAt(0, UIManager.getColor("Panel.background"));
GridBagLayout gblPanel = new GridBagLayout();
gblPanel.columnWidths = new int[] { 0, 0, 0, 0, 86, 0 };
gblPanel.rowHeights = new int[] { 114 };
gblPanel.columnWeights = new double[] { 0.0, 0.0, 0.0, 0.0, 1.0, Double.MIN_VALUE };
gblPanel.rowWeights = new double[] { 1.0 };
panel.setLayout(gblPanel);
{
JPanel panel1 = new JPanel();
GridBagConstraints gbcPanel1 = new GridBagConstraints();
gbcPanel1.fill = GridBagConstraints.BOTH;
gbcPanel1.insets = new Insets(0, 0, 0, 5);
gbcPanel1.gridx = 0;
gbcPanel1.gridy = 0;
panel.add(panel1, gbcPanel1);
panel1.setLayout(new GridLayout(0, 1, 0, 0));
{
JPanel boaPanel = new JPanel();
boaPanel.setToolTipText("Parameters evaluated during BOA execution");
boaPanel.setBorder(new TitledBorder(null, "Boa", TitledBorder.LEADING, TitledBorder.TOP,
null, null));
panel1.add(boaPanel);
boaPanel.setLayout(new BoxLayout(boaPanel, BoxLayout.Y_AXIS));
{
chckbxCentroid = FormatConverterUi.createJCheckBox(BOA_CENTROID, model);
boaPanel.add(chckbxCentroid);
}
{
chckbxSnakes = FormatConverterUi.createJCheckBox(BOA_SNAKES, model);
boaPanel.add(chckbxSnakes);
}
}
}
{
JPanel panel1 = new JPanel();
GridBagConstraints gbcPanel1 = new GridBagConstraints();
gbcPanel1.insets = new Insets(0, 0, 0, 5);
gbcPanel1.fill = GridBagConstraints.BOTH;
gbcPanel1.gridx = 1;
gbcPanel1.gridy = 0;
panel.add(panel1, gbcPanel1);
panel1.setLayout(new GridLayout(0, 1, 0, 0));
{
JPanel ecmmPanel = new JPanel();
ecmmPanel.setToolTipText("Parameters evaluated during ECMM execution");
panel1.add(ecmmPanel);
ecmmPanel.setBorder(new TitledBorder(null, "Ecmm", TitledBorder.LEADING,
TitledBorder.TOP, null, null));
ecmmPanel.setLayout(new BoxLayout(ecmmPanel, BoxLayout.Y_AXIS));
{
chckbxCentroidEcmm = FormatConverterUi.createJCheckBox(ECMM_CENTROID, model);
ecmmPanel.add(chckbxCentroidEcmm);
}
{
chckbxOutlinesEcmm = FormatConverterUi.createJCheckBox(ECCM_OUTLINES, model);
ecmmPanel.add(chckbxOutlinesEcmm);
}
}
}
{
JPanel panel1 = new JPanel();
GridBagConstraints gbcPanel1 = new GridBagConstraints();
gbcPanel1.insets = new Insets(0, 0, 0, 5);
gbcPanel1.fill = GridBagConstraints.BOTH;
gbcPanel1.gridx = 2;
gbcPanel1.gridy = 0;
panel.add(panel1, gbcPanel1);
panel1.setLayout(new GridLayout(0, 1, 0, 0));
{
JPanel statRawPanel = new JPanel();
statRawPanel.setToolTipText("Unprocessed statistics for shape and fluorescence");
statRawPanel.setBorder(
new TitledBorder(new LineBorder(new Color(184, 207, 229)), "Raw Stats",
TitledBorder.LEADING, TitledBorder.TOP, null, new Color(51, 51, 51)));
panel1.add(statRawPanel);
statRawPanel.setLayout(new BoxLayout(statRawPanel, BoxLayout.Y_AXIS));
{
chckbxGeometric = FormatConverterUi.createJCheckBox(STATS_GEOMETRIC, model);
statRawPanel.add(chckbxGeometric);
}
{
chckbxFluoresStat = FormatConverterUi.createJCheckBox(STATS_FLUORES, model);
statRawPanel.add(chckbxFluoresStat);
}
}
{
statsQ11Panel = new JPanel();
statsQ11Panel.setToolTipText("Processed geometric and fluorescence statistics");
statsQ11Panel.setBorder(new TitledBorder(null, "Q11 stats", TitledBorder.LEADING,
TitledBorder.TOP, null, null));
panel1.add(statsQ11Panel);
statsQ11Panel.setLayout(new BoxLayout(statsQ11Panel, BoxLayout.Y_AXIS));
{
chckbxQ11Stat = FormatConverterUi.createJCheckBox(STATS_Q11, model);
statsQ11Panel.add(chckbxQ11Stat);
}
}
}
{
JPanel panel1 = new JPanel();
GridBagConstraints gbcPanel1 = new GridBagConstraints();
gbcPanel1.insets = new Insets(0, 0, 0, 5);
gbcPanel1.fill = GridBagConstraints.BOTH;
gbcPanel1.gridx = 3;
gbcPanel1.gridy = 0;
panel.add(panel1, gbcPanel1);
panel1.setLayout(new GridLayout(0, 1, 0, 0));
{
JPanel mapsPanel = new JPanel();
mapsPanel.setToolTipText("Maps (maQP) evaluated during Q Analysis");
mapsPanel.setBorder(new TitledBorder(null, "Maps", TitledBorder.LEADING,
TitledBorder.TOP, null, null));
panel1.add(mapsPanel);
mapsPanel.setLayout(new BoxLayout(mapsPanel, BoxLayout.Y_AXIS));
{
chckbxCoord = FormatConverterUi.createJCheckBox(MAP_COORD, model);
mapsPanel.add(chckbxCoord);
}
{
chckbxOrigin = FormatConverterUi.createJCheckBox(MAP_ORIGIN, model);
mapsPanel.add(chckbxOrigin);
}
{
chckbxX = FormatConverterUi.createJCheckBox(MAP_X_COORDS, model);
mapsPanel.add(chckbxX);
}
{
chckbxY = FormatConverterUi.createJCheckBox(MAP_Y_COORDS, model);
mapsPanel.add(chckbxY);
}
{
chckbxMotility = FormatConverterUi.createJCheckBox(MAP_MOTILITY, model);
mapsPanel.add(chckbxMotility);
}
{
chckbxConvexity = FormatConverterUi.createJCheckBox(MAP_CONVEXITY, model);
mapsPanel.add(chckbxConvexity);
}
{
chckbxFluo = FormatConverterUi.createJCheckBox(MAP_FLUORES, model);
mapsPanel.add(chckbxFluo);
}
}
}
{
JPanel presetPanel = new JPanel();
presetPanel.setBorder(new TitledBorder(null, "Presets", TitledBorder.LEADING,
TitledBorder.TOP, null, null));
GridBagConstraints gbcPresetPanel = new GridBagConstraints();
gbcPresetPanel.fill = GridBagConstraints.HORIZONTAL;
gbcPresetPanel.anchor = GridBagConstraints.NORTH;
gbcPresetPanel.gridx = 4;
gbcPresetPanel.gridy = 0;
panel.add(presetPanel, gbcPresetPanel);
presetPanel.setLayout(new GridLayout(0, 1, 0, 2));
{
btnBoa = new JToggleButton("Boa");
btnBoa.addActionListener(new ActionListener() {
public void actionPerformed(ActionEvent arg0) {
boolean status = ((JToggleButton) arg0.getSource()).isSelected();
setBoa(status);
}
});
presetPanel.add(btnBoa);
}
{
btnEcmm = new JToggleButton("Ecmm");
btnEcmm.addActionListener(new ActionListener() {
public void actionPerformed(ActionEvent arg0) {
boolean status = ((JToggleButton) arg0.getSource()).isSelected();
setEcmm(status);
}
});
presetPanel.add(btnEcmm);
}
{
btnRawStats = new JToggleButton("Raw Stats");
btnRawStats.addActionListener(new ActionListener() {
public void actionPerformed(ActionEvent e) {
boolean status = ((JToggleButton) e.getSource()).isSelected();
setRawStats(status);
}
});
presetPanel.add(btnRawStats);
}
{
btnMaps = new JToggleButton("Maps");
btnMaps.addActionListener(new ActionListener() {
public void actionPerformed(ActionEvent e) {
boolean status = ((JToggleButton) e.getSource()).isSelected();
setMaps(status);
}
});
{
btnQ11Stats = new JToggleButton("Q11 stats");
btnQ11Stats.addActionListener(new ActionListener() {
public void actionPerformed(ActionEvent e) {
boolean status = ((JToggleButton) e.getSource()).isSelected();
setQ11Stats(status);
}
});
presetPanel.add(btnQ11Stats);
}
presetPanel.add(btnMaps);
}
{
JSeparator separator = new JSeparator();
presetPanel.add(separator);
}
{
JButton btnAll = new JButton("All");
btnAll.addActionListener(new ActionListener() {
public void actionPerformed(ActionEvent e) {
boolean status = true;
setUiElements(status);
}
});
btnAll.setBackground(Color.ORANGE);
presetPanel.add(btnAll);
}
{
JButton btnNone = new JButton("None");
btnNone.addActionListener(new ActionListener() {
public void actionPerformed(ActionEvent e) {
boolean status = false;
setUiElements(status);
}
});
presetPanel.add(btnNone);
}
}
}
{
JPanel panel = new JPanel();
panel.setBorder(null);
tabbedPane.addTab("Info", null, panel, null);
panel.setLayout(new BorderLayout(0, 0));
{
panel1 = new JPanel();
panel1.setLayout(new BorderLayout(0, 0));
{
infoText = new JTextPane();
panel1.add(infoText);
infoText.setEditable(false);
}
}
{
scrollPane = new JScrollPane(panel1);
panel.add(scrollPane);
}
}
}
{
JPanel buttonPane = new JPanel();
getContentPane().add(buttonPane, BorderLayout.SOUTH);
buttonPane.setLayout(new BorderLayout(0, 0));
{
okcancelPanel = new JPanel();
FlowLayout flOkcancelPanel = (FlowLayout) okcancelPanel.getLayout();
flOkcancelPanel.setHgap(1);
flOkcancelPanel.setAlignment(FlowLayout.RIGHT);
buttonPane.add(okcancelPanel, BorderLayout.EAST);
{
generateButton = new JButton("Generate");
generateButton.addActionListener(new ActionListener() {
public void actionPerformed(ActionEvent arg0) {
tabbedPane.setSelectedIndex(1);
}
});
generateButton.setToolTipText("Save selected datasets into separate files");
okcancelPanel.add(generateButton);
generateButton.setActionCommand("");
getRootPane().setDefaultButton(generateButton);
}
{
cancelButton = new JButton("Quit");
okcancelPanel.add(cancelButton);
cancelButton.setActionCommand("");
}
}
{
loadPanel = new JPanel();
FlowLayout flLoadPanel = (FlowLayout) loadPanel.getLayout();
flLoadPanel.setHgap(1);
flLoadPanel.setAlignment(FlowLayout.LEFT);
buttonPane.add(loadPanel, BorderLayout.WEST);
{
btnLoad = new JButton("Load QCONF");
btnLoad.setToolTipText("Load QCONF and allow further selections");
btnLoad.setFont(new Font("Dialog", Font.BOLD, 12));
btnLoad.setEnabled(true);
loadPanel.add(btnLoad);
}
{
btnConvertAny = new JButton("Convert any");
btnConvertAny.addActionListener(new ActionListener() {
public void actionPerformed(ActionEvent e) {
tabbedPane.setSelectedIndex(1);
}
});
btnConvertAny.setFont(new Font("Dialog", Font.BOLD, 12));
btnConvertAny.setToolTipText("Load paQP/QCONF and convert");
loadPanel.add(btnConvertAny);
}
}
{
multifilePanel = new JPanel();
buttonPane.add(multifilePanel, BorderLayout.CENTER);
{
chckbxMultiFileOutput = new JCheckBox(FILE_PER_FRAME);
chckbxMultiFileOutput.addItemListener(new ItemListener() {
public void itemStateChanged(ItemEvent arg0) {
if (chckbxMultiFileOutput.isSelected()) {
chckbxMultiFileOutput.setText(FILE_PER_FRAME);
} else {
chckbxMultiFileOutput.setText(FILE_PER_CELL);
}
model.areMultipleFiles = chckbxMultiFileOutput.isSelected();
}
});
chckbxMultiFileOutput.setSelected(model.areMultipleFiles);
chckbxMultiFileOutput.setToolTipText(
"Save one file per cell or one file per frame (snakes and outlines only)");
multifilePanel.add(chckbxMultiFileOutput);
}
}
}
}
/**
* Get reference to OK button.
*
* @return Reference to OK button to Controller.
*/
public JButton getOkButton() {
return generateButton;
}
protected JCheckBox getChckbxCentroid() {
return chckbxCentroid;
}
protected JCheckBox getChckbxSnakes() {
return chckbxSnakes;
}
protected boolean getChckbxMultiFileOutput() {
return chckbxMultiFileOutput.isSelected();
}
protected JCheckBox getChckbxCentroidEcmm() {
return chckbxCentroidEcmm;
}
protected JCheckBox getChckbxOutlinesEcmm() {
return chckbxOutlinesEcmm;
}
protected JCheckBox getChckbxGeometric() {
return chckbxGeometric;
}
protected JCheckBox getChckbxFluoresStat() {
return chckbxFluoresStat;
}
protected JCheckBox getChckbxQ11Stat() {
return chckbxQ11Stat;
}
protected JCheckBox getChckbxX() {
return chckbxX;
}
protected JCheckBox getChckbxOrigin() {
return chckbxOrigin;
}
protected JCheckBox getChckbxCoord() {
return chckbxCoord;
}
protected JCheckBox getChckbxFluo() {
return chckbxFluo;
}
protected JCheckBox getChckbxY() {
return chckbxY;
}
protected JCheckBox getChckbxMotility() {
return chckbxMotility;
}
protected JCheckBox getChckbxConvexity() {
return chckbxConvexity;
}
private void setBoa(boolean status) {
getChckbxCentroid().setSelected(status);
getChckbxSnakes().setSelected(status);
}
private void setEcmm(boolean status) {
getChckbxCentroidEcmm().setSelected(status);
getChckbxOutlinesEcmm().setSelected(status);
}
private void setRawStats(boolean status) {
getChckbxGeometric().setSelected(status);
getChckbxFluoresStat().setSelected(status);
}
private void setQ11Stats(boolean status) {
getChckbxQ11Stat().setSelected(status);
}
private void setMaps(boolean status) {
getChckbxCoord().setSelected(status);
getChckbxOrigin().setSelected(status);
getChckbxX().setSelected(status);
getChckbxY().setSelected(status);
getChckbxMotility().setSelected(status);
getChckbxConvexity().setSelected(status);
getChckbxFluo().setSelected(status);
}
protected JToggleButton getBtnEcmm() {
return btnEcmm;
}
protected JToggleButton getBtnBoa() {
return btnBoa;
}
protected JToggleButton getBtnRawStats() {
return btnRawStats;
}
protected JToggleButton getBtnQ11Stats() {
return btnQ11Stats;
}
protected JToggleButton getBtnMaps() {
return btnMaps;
}
void setUiElements(boolean status) {
setBoa(status);
setEcmm(status);
setRawStats(status);
setMaps(status);
setQ11Stats(status);
getBtnBoa().setSelected(status);
getBtnEcmm().setSelected(status);
getBtnMaps().setSelected(status);
getBtnRawStats().setSelected(status);
getBtnQ11Stats().setSelected(status);
}
protected JButton getCancelButton() {
return cancelButton;
}
protected JButton getLoadButton() {
return btnLoad;
}
protected JButton getConvertButton() {
return btnConvertAny;
}
protected JTextPane getInfoText() {
return infoText;
}
}