com.github.celldynamics.quimp.plugin.binaryseg.BinarySegmentationOptions Maven / Gradle / Ivy

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QuimP software, a set of plugins for ImageJ to quantify spatio-temporal patterns of fluorescently labeled proteins in the cortex of moving cells.

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package com.github.celldynamics.quimp.plugin.binaryseg;

import com.github.celldynamics.quimp.plugin.AbstractPluginOptions;
import com.github.celldynamics.quimp.plugin.EscapedPath;
import com.github.celldynamics.quimp.plugin.ParamList;
import com.github.celldynamics.quimp.plugin.utils.QWindowBuilder;

/**
 * Hold options for Binary Segmentation.
 * 
 * @author p.baniukiewicz
 *
 */
public class BinarySegmentationOptions extends AbstractPluginOptions {

  /**
   * Plugin options in format of QWindowBuilder.
   * 
   * @see QWindowBuilder
   * @see BinarySegmentationView
   * @see BinarySegmentationView#SELECT_MASK
   * @see BinarySegmentationView#NAME
   * @see BinarySegmentationView#LOAD_MASK
   * @see BinarySegmentationView#CLEAR_NEST
   * @see BinarySegmentationView#RESTORE_SNAKE
   * @see BinarySegmentationView#STEP2
   * @see BinarySegmentationView#SELECT_ORIGINAL_IMAGE
   */
  public ParamList options;

  /**
   * Keep file name of mask if loaded by Load button.
   * 
   * Otherwise plugin looks into {@link BinarySegmentationView#SELECT_MASK} field in
   * Gui.
   */
  @EscapedPath
  public String maskFileName = "";

  /*
   * (non-Javadoc)
   * 
   * @see java.lang.Object#clone()
   */
  @Override
  public Object clone() throws CloneNotSupportedException {
    BinarySegmentationOptions ret = new BinarySegmentationOptions();
    ret.options = new ParamList(this.options);
    ret.maskFileName = this.maskFileName;
    ret.paramFile = paramFile;
    return ret;
  }

  /*
   * (non-Javadoc)
   * 
   * @see java.lang.Object#toString()
   */
  @Override
  public String toString() {
    return "BinarySegmentationOptions [options=" + options + ", maskFileName=" + maskFileName
            + ", outputPath=" + paramFile + "]";
  }

}