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Microplate library for parsing wet lab data.
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/**
* Licensed to the Apache Software Foundation (ASF) under one
* or more contributor license agreements. See the NOTICE file
* distributed with this work for additional information
* regarding copyright ownership. The ASF licenses this file
* to you under the Apache License, Version 2.0 (the
* "License"); you may not use this file except in compliance
* with the License. You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing,
* software distributed under the License is distributed on an
* "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
* KIND, either express or implied. See the License for the
* specific language governing permissions and limitations
* under the License.
*/
/*--------------------------- Package Declaration ----------------------------*/
package com.github.jessemull.microflexbigdecimal.io;
/*------------------------------- Dependencies -------------------------------*/
import java.math.BigDecimal;
import java.util.ArrayList;
import java.util.List;
import java.util.Map;
import javax.xml.bind.annotation.XmlElement;
import javax.xml.bind.annotation.XmlElementWrapper;
import javax.xml.bind.annotation.XmlRootElement;
import javax.xml.bind.annotation.XmlType;
import com.github.jessemull.microflexbigdecimal.plate.Well;
import com.github.jessemull.microflexbigdecimal.plate.WellSet;
/**
* This is a wrapper class used to marshal/unmarshal an XML encoded result.
*
* @author Jesse L. Mull
* @update Updated Oct 17, 2016
* @address http://www.jessemull.com
* @email [email protected]
*/
@XmlRootElement(name = "result")
@XmlType (propOrder={"type", "label", "size", "wells"})
public class ResultXML {
/*---------------------------- Private Fields ----------------------------*/
private String type; // Data set numerical type
private String label; // The well index
private int size; // Size of the data set
private List wells = new ArrayList(); // Array holding the well values
/*------------------------------ Constructors ----------------------------*/
public ResultXML(){}
/**
* Creates a result XML object from a map.
* @param Map the result map
* @param String the label
*/
public ResultXML(Map map, String label) {
this.type = "BigDecimal";
this.label = label;
this.size = map.size();
for(Map.Entry entry : map.entrySet()) {
this.wells.add(new ResultWellXML(entry.getKey().index(), entry.getValue()));
}
}
/*-------------------------- Getters and setters -------------------------*/
/**
* Sets the type.
* @param String the numerical type
*/
@XmlElement
public void setType(String type) {
this.type = type;
}
/**
* Sets the label.
* @param String the label
*/
@XmlElement
public void setLabel(String label) {
this.label = label;
}
/**
* Sets the size.
* @param String the numerical type
*/
@XmlElement
public void setSize(int size) {
this.size = size;
}
/**
* Sets the wells list.
* @param List the wells list
*/
@XmlElement(name="well")
@XmlElementWrapper(name="wells")
public void setWells(List list) {
this.wells = list;
}
/**
* Returns the numerical type as a string.
* @return the numerical type
*/
public String getType() {
return this.type;
}
/**
* Returns the label.
* @return the label
*/
public String getLabel() {
return this.label;
}
/**
* Returns the size of the well list.
* @return the size of the well list
*/
public int getSize() {
return this.size;
}
/**
* Returns the well list.
* @return the result list
*/
public List getWells() {
return this.wells;
}
/**
* Returns a WellSetBigDecimal object.
* @return the well set
*/
public WellSet toWellSetObject() {
WellSet result = new WellSet();
result.setLabel(this.label);
for(ResultWellXML well : this.wells) {
result.add(well.toWellObject());
}
return result;
}
}
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