htsjdk.tribble.readers.TabixIteratorLineReader Maven / Gradle / Ivy

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/*
 * The MIT License
 *
 * Copyright (c) 2013 The Broad Institute
 *
 * Permission is hereby granted, free of charge, to any person obtaining a copy
 * of this software and associated documentation files (the "Software"), to deal
 * in the Software without restriction, including without limitation the rights
 * to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
 * copies of the Software, and to permit persons to whom the Software is
 * furnished to do so, subject to the following conditions:
 *
 * The above copyright notice and this permission notice shall be included in
 * all copies or substantial portions of the Software.
 *
 * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
 * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
 * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
 * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
 * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
 * OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
 * THE SOFTWARE.
 */
package htsjdk.tribble.readers;

import htsjdk.samtools.util.RuntimeIOException;

import java.io.IOException;

/**
 * @author Jim Robinson
 * @date 2/11/12
 */
public class TabixIteratorLineReader implements LineReader {

    TabixReader.Iterator iterator;


    public TabixIteratorLineReader(TabixReader.Iterator iterator) {
        this.iterator = iterator;
    }

    public String readLine() {
        try {
            return iterator != null ? iterator.next() : null;
        } catch (IOException e) {
            throw new RuntimeIOException(e);
        }
    }

    public void close() {
        // Ignore -
    }
}