htsjdk.samtools.cram.encoding.readfeatures.ReadFeature Maven / Gradle / Ivy
/**
* ****************************************************************************
* Copyright 2013 EMBL-EBI
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
* ****************************************************************************
*/
package htsjdk.samtools.cram.encoding.readfeatures;
/**
* An interface to capture data in read coordinates.
*/
public interface ReadFeature {
/**
* @return zero-based position in the read
*/
int getPosition();
void setPosition(int position);
/**
* Read features are distinguished by operator, similar to cigar operator.
* @return type of the read feature
*/
byte getOperator();
}