All Downloads are FREE. Search and download functionalities are using the official Maven repository.

htsjdk.variant.vcf.VCFInfoHeaderLine Maven / Gradle / Ivy

There is a newer version: 4.1.3
Show newest version
/*
* Copyright (c) 2012 The Broad Institute
* 
* Permission is hereby granted, free of charge, to any person
* obtaining a copy of this software and associated documentation
* files (the "Software"), to deal in the Software without
* restriction, including without limitation the rights to use,
* copy, modify, merge, publish, distribute, sublicense, and/or sell
* copies of the Software, and to permit persons to whom the
* Software is furnished to do so, subject to the following
* conditions:
* 
* The above copyright notice and this permission notice shall be
* included in all copies or substantial portions of the Software.
* 
* THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
* EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES
* OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
* NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT
* HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY,
* WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
* FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR
* THE USE OR OTHER DEALINGS IN THE SOFTWARE.
*/

package htsjdk.variant.vcf;


/**
 * @author ebanks
 *         

* Class VCFInfoHeaderLine *

*

* A class representing a key=value entry for INFO fields in the VCF header *

*/ public class VCFInfoHeaderLine extends VCFCompoundHeaderLine { public VCFInfoHeaderLine(String name, int count, VCFHeaderLineType type, String description) { super(name, count, type, description, SupportedHeaderLineType.INFO); } public VCFInfoHeaderLine(String name, VCFHeaderLineCount count, VCFHeaderLineType type, String description) { super(name, count, type, description, SupportedHeaderLineType.INFO); } public VCFInfoHeaderLine(String name, int count, VCFHeaderLineType type, String description, String source, String version) { super(name, count, type, description, SupportedHeaderLineType.INFO, source, version); } public VCFInfoHeaderLine(String name, VCFHeaderLineCount count, VCFHeaderLineType type, String description, String source, String version) { super(name, count, type, description, SupportedHeaderLineType.INFO, source, version); } public VCFInfoHeaderLine(String line, VCFHeaderVersion version) { super(line, version, SupportedHeaderLineType.INFO); } // info fields allow flag values @Override boolean allowFlagValues() { return true; } @Override public boolean shouldBeAddedToDictionary() { return true; } }




© 2015 - 2025 Weber Informatics LLC | Privacy Policy