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Graph I/O library which can be used to load and store graphs
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/* 
 *  Copyright or © or Copr. Ecole des Mines d'Alès (2012-2014) 
 *  
 *  This software is a computer program whose purpose is to provide 
 *  several functionalities for the processing of semantic data 
 *  sources such as ontologies or text corpora.
 *  
 *  This software is governed by the CeCILL  license under French law and
 *  abiding by the rules of distribution of free software.  You can  use, 
 *  modify and/ or redistribute the software under the terms of the CeCILL
 *  license as circulated by CEA, CNRS and INRIA at the following URL
 *  "http://www.cecill.info". 
 * 
 *  As a counterpart to the access to the source code and  rights to copy,
 *  modify and redistribute granted by the license, users are provided only
 *  with a limited warranty  and the software's author,  the holder of the
 *  economic rights,  and the successive licensors  have only  limited
 *  liability. 

 *  In this respect, the user's attention is drawn to the risks associated
 *  with loading,  using,  modifying and/or developing or reproducing the
 *  software by the user in light of its specific status of free software,
 *  that may mean  that it is complicated to manipulate,  and  that  also
 *  therefore means  that it is reserved for developers  and  experienced
 *  professionals having in-depth computer knowledge. Users are therefore
 *  encouraged to load and test the software's suitability as regards their
 *  requirements in conditions enabling the security of their systems and/or 
 *  data to be ensured and,  more generally, to use and operate it in the 
 *  same conditions as regards security. 
 * 
 *  The fact that you are presently reading this means that you have had
 *  knowledge of the CeCILL license and that you accept its terms.
 */
package slib.graph.io.loader.bio.mesh;

import org.xml.sax.Attributes;
import org.xml.sax.SAXException;
import org.xml.sax.helpers.DefaultHandler;

/**
 *
 * @author Sébastien Harispe 
 */
public class MeshXMLHandler extends DefaultHandler {

    GraphLoader_MESH_XML loader;
    public MeshConcept concept;
    boolean descriptorName = false;
    boolean descriptorUI = false;
    boolean treeNumber = false;
    final String DESCRIPTOR_RECORD = "DescriptorRecord";
    final String DESCRIPTOR_URI = "DescriptorUI";
    final String DESCRIPTOR_NAME = "DescriptorName";
    final String TREE_NUMBER = "TreeNumber";

    private StringBuffer currentTreeNumber;
    private StringBuffer currentDescriptorName;
    private StringBuffer currentDescriptorUI;

    /**
     * Create a XML handler for MeSH.
     *
     * @param loader the loader associated to the handler
     */
    public MeshXMLHandler(GraphLoader_MESH_XML loader) {
        this.loader = loader;

        currentTreeNumber = new StringBuffer();
        currentDescriptorName = new StringBuffer();
        currentDescriptorUI = new StringBuffer();
    }

    @Override
    public void startElement(String uri, String localName, String qName, Attributes attributes) throws SAXException {

        if (qName.equals(DESCRIPTOR_RECORD)) {// start creation of a concept
            concept = new MeshConcept();
        }

        if (qName.equals(DESCRIPTOR_URI) && concept.descriptorUI == null) {
            descriptorUI = true;
        }

        if (qName.equals(DESCRIPTOR_NAME) && concept.descriptorName == null) { // define descriptor name
            descriptorName = true;
        }

        if (qName.equals(TREE_NUMBER)) {// define tree number
            treeNumber = true;
        }
    }

    @Override
    public void endElement(String uri, String localName,
            String qName) throws SAXException {

        if (descriptorUI) {
            descriptorUI = false;
            concept.descriptorUI = currentDescriptorUI.toString();
            currentDescriptorUI = new StringBuffer();
        } else if (descriptorName) {
            descriptorName = false;
            concept.descriptorName = currentDescriptorName.toString();
            currentDescriptorName = new StringBuffer();
        } else if (treeNumber) {
            treeNumber = false;
            concept.addTreeNumber(currentTreeNumber.toString());
            currentTreeNumber = new StringBuffer();
        }

        if (qName.equals(DESCRIPTOR_RECORD)) {
            loader.addConcept(concept);
        }
    }

    @Override
    public void characters(char ch[], int start, int length) throws SAXException {

        if (descriptorUI) {
            currentDescriptorUI.append(new String(ch, start, length));
        } else if (descriptorName) {
            currentDescriptorName.append(new String(ch, start, length));
        } else if (treeNumber) {
            currentTreeNumber.append(new String(ch, start, length));
        }
    }
}