slib.tools.ontofocus.cli.debug.App Maven / Gradle / Ivy

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/* 
 *  Copyright or © or Copr. Ecole des Mines d'Alès (2012-2014) 
 *  
 *  This software is a computer program whose purpose is to provide 
 *  several functionalities for the processing of semantic data 
 *  sources such as ontologies or text corpora.
 *  
 *  This software is governed by the CeCILL  license under French law and
 *  abiding by the rules of distribution of free software.  You can  use, 
 *  modify and/ or redistribute the software under the terms of the CeCILL
 *  license as circulated by CEA, CNRS and INRIA at the following URL
 *  "http://www.cecill.info". 
 * 
 *  As a counterpart to the access to the source code and  rights to copy,
 *  modify and redistribute granted by the license, users are provided only
 *  with a limited warranty  and the software's author,  the holder of the
 *  economic rights,  and the successive licensors  have only  limited
 *  liability. 

 *  In this respect, the user's attention is drawn to the risks associated
 *  with loading,  using,  modifying and/or developing or reproducing the
 *  software by the user in light of its specific status of free software,
 *  that may mean  that it is complicated to manipulate,  and  that  also
 *  therefore means  that it is reserved for developers  and  experienced
 *  professionals having in-depth computer knowledge. Users are therefore
 *  encouraged to load and test the software's suitability as regards their
 *  requirements in conditions enabling the security of their systems and/or 
 *  data to be ensured and,  more generally, to use and operate it in the 
 *  same conditions as regards security. 
 * 
 *  The fact that you are presently reading this means that you have had
 *  knowledge of the CeCILL license and that you accept its terms.
 */
package slib.tools.ontofocus.cli.debug;

import slib.tools.ontofocus.cli.OntoFocusCmdHandler;

/**
 *
 * @author Sébastien Harispe 
 */
public class App {

    public static void main(String[] args) throws Exception {
        
        String dir = "/home/seb/Desktop/desktop/ontoFocus/";
        String cmd = " -onto "+dir+"gene_ontology_ext.obo  -queries "+dir+"go_infos_clean.csv -prefixes GO=http://go/ -outprefix "+dir+"debug  -tr -finclude GO:0003674,GO:0005575,GO:0008150 ";
        System.out.println(cmd);
        
        OntoFocusCmdHandler.execCommandLine(cmd.split(" "));
    }
}