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fr.inria.prophet4j.dataset.DataLoader Maven / Gradle / Ivy
package fr.inria.prophet4j.dataset;
import java.io.File;
import java.io.FilenameFilter;
import java.util.ArrayList;
import java.util.Arrays;
import java.util.HashMap;
import java.util.List;
import java.util.Map;
import com.google.common.collect.Lists;
import com.google.common.io.Files;
class DataLoader {
// load buggy files and human patches
static Map> loadSANERWithoutPatches(String dataPath) throws NullPointerException {
Map> catalogs = new HashMap<>();
for (File typeFile : new File(dataPath).listFiles((dir, name) -> !name.startsWith("."))) {
File[] targetDirs = typeFile.listFiles((dir, name) -> name.equals("modifiedFiles"));
if (targetDirs != null && targetDirs.length > 0) {
for (File numFile : targetDirs[0].listFiles((dir, name) -> !name.startsWith("."))) {
String pathName = typeFile.getName() + numFile.getName();
if (!catalogs.containsKey(pathName)) {
catalogs.put(pathName, new HashMap<>());
}
Map catalog = catalogs.get(pathName);
List oldFiles = new ArrayList<>();
List fixFiles = new ArrayList<>();
for (File dataFile : numFile.listFiles((dir, name) -> !name.startsWith("."))) {
if (dataFile.getName().equals("old")) {
oldFiles.addAll(Arrays.asList(dataFile.listFiles((dir, name) -> name.endsWith(".java"))));
} else if (dataFile.getName().equals("fix")) {
fixFiles.addAll(Arrays.asList(dataFile.listFiles((dir, name) -> name.endsWith(".java"))));
}
}
for (File key : oldFiles) {
String keyName = key.getName();
assert !catalog.containsKey(key);
for (File value : fixFiles) {
String valueName = value.getName();
if (keyName.equals(valueName)) {
catalog.put(key, value);
break;
}
}
}
}
}
}
return catalogs;
}
// load buggy files and human patches
static Map> loadCardumenWithoutPatches(String dataPath, String patchPath)
throws NullPointerException {
Map> catalogs = new HashMap<>();
FilenameFilter javaFilter = (dir, name) -> name.endsWith(".java");
for (File typeFile : new File(dataPath).listFiles((dir, name) -> !name.startsWith("."))) {
for (File numFile : typeFile.listFiles((dir, name) -> !name.startsWith("."))) {
String pathName = typeFile.getName() + "/" + numFile.getName();
if (!catalogs.containsKey(pathName)) {
catalogs.put(pathName, new HashMap<>());
}
Map catalog = catalogs.get(pathName);
List buggyFiles = new ArrayList<>();
List patchedFiles = new ArrayList<>();
for (File dataFile : numFile.listFiles((dir, name) -> !name.startsWith("."))) {
if (dataFile.getName().equals("buggy")) {
buggyFiles.addAll(Arrays.asList(dataFile.listFiles((dir, name) -> !name.startsWith("."))));
} else if (dataFile.getName().equals("patched")) {
patchedFiles.addAll(Arrays.asList(dataFile.listFiles((dir, name) -> !name.startsWith("."))));
}
}
List keys = new ArrayList<>();
List values = new ArrayList<>();
for (File buggyFile : buggyFiles) {
if (buggyFile.getName().endsWith(".java")) {
keys.add(buggyFile);
}
}
for (File patchedFile : patchedFiles) {
values.addAll(Arrays.asList(patchedFile.listFiles(javaFilter)));
}
for (File key : keys) {
String keyName = key.getName();
List patches = new ArrayList<>();
// we add human patch at the first place
File humanFile = new File(patchPath + pathName);
for (File file : Lists.newArrayList(Files.fileTraverser().depthFirstPreOrder(humanFile))) {
String fileName = file.getName();
if (keyName.equals(fileName)) {
patches.add(file);
}
}
if (patches.size() == 1) {
// the following files are generated patches
for (File value : values) {
String valueName = value.getName();
if (keyName.equals(valueName)) {
patches.add(value);
}
}
if (patches.size() > 1) {
catalog.put(key, patches.get(0));
}
}
}
}
}
return catalogs;
}
// load buggy files and human patches, as well as generated patches
static Map>> loadCardumenWithPatches(String dataPath, String patchPath)
throws NullPointerException {
Map>> catalogs = new HashMap<>();
FilenameFilter javaFilter = (dir, name) -> name.endsWith(".java");
for (File typeFile : new File(dataPath).listFiles((dir, name) -> !name.startsWith("."))) {
for (File numFile : typeFile.listFiles((dir, name) -> !name.startsWith("."))) {
String pathName = typeFile.getName() + "/" + numFile.getName();
if (!catalogs.containsKey(pathName)) {
catalogs.put(pathName, new HashMap<>());
}
Map> catalog = catalogs.get(pathName);
List buggyFiles = new ArrayList<>();
List patchedFiles = new ArrayList<>();
for (File dataFile : numFile.listFiles((dir, name) -> !name.startsWith("."))) {
if (dataFile.getName().equals("buggy")) {
buggyFiles.addAll(Arrays.asList(dataFile.listFiles((dir, name) -> !name.startsWith("."))));
} else if (dataFile.getName().equals("patched")) {
patchedFiles.addAll(Arrays.asList(dataFile.listFiles((dir, name) -> !name.startsWith("."))));
}
}
List keys = new ArrayList<>();
List values = new ArrayList<>();
for (File buggyFile : buggyFiles) {
if (buggyFile.getName().endsWith(".java")) {
keys.add(buggyFile);
}
}
for (File patchedFile : patchedFiles) {
values.addAll(Arrays.asList(patchedFile.listFiles(javaFilter)));
}
for (File key : keys) {
String keyName = key.getName();
List patches = new ArrayList<>();
// we add human patch at the first place
File humanFile = new File(patchPath + pathName);
for (File file : Lists.newArrayList(Files.fileTraverser().depthFirstPreOrder(humanFile))) {
String fileName = file.getName();
if (keyName.equals(fileName)) {
patches.add(file);
}
}
if (patches.size() == 1) {
// the following files are generated patches
for (File value : values) {
String valueName = value.getName();
if (keyName.equals(valueName)) {
patches.add(value);
}
}
if (patches.size() > 1) {
catalog.put(key, patches);
}
}
}
}
}
return catalogs;
}
/**
* for Project ODS(OverfittingDetectionSystem) BEARS BUG_DOT_JAR_MINUS_MATH
* QUIX_BUGS
*/
// load buggy files and human patches
static Map> loadODSWithoutPatches(String dataPath) throws NullPointerException {
Map> catalogs = new HashMap<>();
FilenameFilter javaFilter = (dir, name) -> name.endsWith(".java");
for (File eachFile : new File(dataPath).listFiles((dir, name) -> !name.startsWith("."))) {
File humanFile = null;
try {
File[] humanFiles = new File(eachFile.getPath() + "/human").listFiles(javaFilter);
if (humanFiles.length == 1) {
humanFile = humanFiles[0];
} else {
continue;
}
} catch (NullPointerException e) {
// e.printStackTrace();
continue;
}
String pathName = eachFile.getName();
if (!catalogs.containsKey(pathName)) {
catalogs.put(pathName, new HashMap<>());
}
Map catalog = catalogs.get(pathName);
File buggyFile = null;
String humanFileName = humanFile.getName();
FilenameFilter nameFilter = (dir, name) -> name.equals(humanFileName);
label: for (File typeFile : eachFile.listFiles((dir, name) -> !name.startsWith("."))) {
if (typeFile.getName().equals("human")) {
continue;
}
for (File numFile : typeFile.listFiles((dir, name) -> !name.startsWith("."))) {
if (buggyFile == null) {
File[] keyFiles = new File(numFile.getPath() + "/buggy").listFiles(nameFilter);
if (keyFiles.length == 1) {
buggyFile = keyFiles[0];
break label;
}
}
}
}
catalog.put(buggyFile, humanFile);
}
return catalogs;
}
// load buggy files and human patches, as well as generated patches
static Map>> loadODSWithPatches(String dataPath) throws NullPointerException {
Map>> catalogs = new HashMap<>();
FilenameFilter javaFilter = (dir, name) -> name.endsWith(".java");
for (File eachFile : new File(dataPath).listFiles((dir, name) -> !name.startsWith("."))) {
File humanFile = null;
try {
File[] humanFiles = new File(eachFile.getPath() + "/human").listFiles(javaFilter);
if (humanFiles.length == 1) {
humanFile = humanFiles[0];
} else {
continue;
}
} catch (NullPointerException e) {
// e.printStackTrace();
continue;
}
String pathName = eachFile.getName();
if (!catalogs.containsKey(pathName)) {
catalogs.put(pathName, new HashMap<>());
}
Map> catalog = catalogs.get(pathName);
File buggyFile = null;
List patchedFiles = new ArrayList<>();
// we add human patch at the first place
patchedFiles.add(0, humanFile);
String humanFileName = humanFile.getName();
FilenameFilter nameFilter = (dir, name) -> name.equals(humanFileName);
for (File typeFile : eachFile.listFiles((dir, name) -> !name.startsWith("."))) {
if (typeFile.getName().equals("human")) {
continue;
}
for (File numFile : typeFile.listFiles((dir, name) -> !name.startsWith("."))) {
if (buggyFile == null) {
File[] keyFiles = new File(numFile.getPath() + "/buggy").listFiles(nameFilter);
if (keyFiles.length == 1) {
buggyFile = keyFiles[0];
}
}
File[] valueFiles = new File(numFile.getPath() + "/patch").listFiles(nameFilter);
if (valueFiles.length == 1) {
// the following files are generated patches
patchedFiles.addAll(Arrays.asList(valueFiles));
}
}
}
catalog.put(buggyFile, patchedFiles);
}
return catalogs;
}
static Map> loadCLOSUREWithoutPatches(String dataPath) throws NullPointerException {
Map> catalogs = new HashMap<>();
System.out.println(dataPath);
for (File file : new File(dataPath).listFiles((dir, name) -> !name.startsWith("."))) {
// patchInfo
String pathName = file.getName();
File buggyFile = null;
File patchedFile = null;
for (File tmpFile : Files.fileTraverser().breadthFirst(file)) {
if (tmpFile.getName().endsWith("_s.java")) {
buggyFile = tmpFile;
} else if (tmpFile.getName().endsWith("_t.java")) {
patchedFile = tmpFile;
}
}
if (buggyFile != null && patchedFile != null) {
Map catalog = new HashMap<>();
catalog.put(buggyFile, patchedFile);
if (!catalogs.containsKey(pathName)) {
catalogs.put(pathName, catalog);
} else {
catalogs.get(pathName).putAll(catalog);
}
}
}
return catalogs;
}
}
