org.jtransforms.fft.RealFFTUtils_3D Maven / Gradle / Ivy
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package org.jtransforms.fft;
// @formatter:off
import pl.edu.icm.jlargearrays.DoubleLargeArray;
import pl.edu.icm.jlargearrays.FloatLargeArray;
/**
*
* This is a set of utility methods for R/W access to data resulting from a call
* to the Fourier transform of real data. Memory optimized methods,
* namely
*
* - {@link DoubleFFT_3D#realForward(double[])}
* - {@link DoubleFFT_3D#realForward(DoubleLargeArray)}
* - {@link DoubleFFT_3D#realForward(double[][][])}
* - {@link FloatFFT_3D#realForward(float[])}
* - {@link FloatFFT_3D#realForward(FloatLargeArray)}
* - {@link FloatFFT_3D#realForward(float[][][])}
*
* are implemented to handle this case specifically. However, packing of the
* data in the data array is somewhat obscure. This class provides methods for
* direct access to the data, without the burden of all necessary tests.
* Example for Fourier Transform of real, double precision 1d data
*
*
* DoubleFFT_3D fft = new DoubleFFT_2D(slices, rows, columns);
* double[] data = new double[2 * slices * rows * columns];
* ...
* fft.realForwardFull(data);
* data[(s1 * rows + r1) * 2 * columns + c1] = val1;
* val2 = data[(s2 * rows + r2) * 2 * columns + c2];
*
* is equivalent to
*
* DoubleFFT_3D fft = new DoubleFFT_3D(slices, rows, columns);
* RealFFTUtils_3D unpacker = new RealFFTUtils_3D(slices, rows, columns);
* double[] data = new double[slices * rows * columns];
* ...
* fft.realForward(data);
* unpacker.pack(val1, s1, r1, c1, data);
* val2 = unpacker.unpack(s2, r2, c2, data, 0);
*
* Even (resp. odd) values of c correspond to the real (resp.
* imaginary) part of the Fourier mode.
* Example for Fourier Transform of real, double precision 3d data
*
*
* DoubleFFT_3D fft = new DoubleFFT_3D(slices, rows, columns);
* double[][][] data = new double[slices][rows][2 * columns];
* ...
* fft.realForwardFull(data);
* data[s1][r1][c1] = val1;
* val2 = data[s2][r2][c2];
*
* is equivalent to
*
* DoubleFFT_3D fft = new DoubleFFT_3D(slices, rows, columns);
* RealFFTUtils_3D unpacker = new RealFFTUtils_3D(slices, rows, columns);
* double[][][] data = new double[slices][rows][columns];
* ...
* fft.realForward(data);
* unpacker.pack(val1, s1, r1, c1, data);
* val2 = unpacker.unpack(s2, r2, c2, data, 0);
*
* Even (resp. odd) values of c correspond to the real (resp.
* imaginary) part of the Fourier mode.
*
* @author Sébastien Brisard
*/
// @formatter:on
public class RealFFTUtils_3D
{
/**
* The constant int value of 1.
*/
private static final int ONE = 1;
/**
* The constant int value of 2.
*/
private static final int TWO = 2;
/**
* The constant int value of 0.
*/
private static final int ZERO = 0;
/**
* The constant int value of 1.
*/
private static final long ONEL = 1;
/**
* The constant int value of 2.
*/
private static final long TWOL = 2;
/**
* The constant int value of 0.
*/
private static final long ZEROL = 0;
/**
* The size of the data in the third direction.
*/
private final int columns;
/**
* The size of the data in the third direction.
*/
private final long columnsl;
/**
* The size of the data in the second direction.
*/
private final int rows;
/**
* The size of the data in the second direction.
*/
private final long rowsl;
/**
* The constant value of 2 * columns.
*/
private final int rowStride;
/**
* The constant value of 2 * columns.
*/
private final long rowStridel;
/**
* The size of the data in the first direction.
*/
private final int slices;
/**
* The size of the data in the first direction.
*/
private final long slicesl;
/**
* The constant value of 2 * rows * columns.
*/
private final int sliceStride;
/**
* The constant value of 2 * rows * columns.
*/
private final long sliceStridel;
/**
* Creates a new instance of this class. The size of the underlying
* {@link DoubleFFT_3D} or {@link FloatFFT_3D} must be specified.
*
* @param slices
* number of slices
* @param rows
* number of rows
* @param columns
* number of columns
*/
public RealFFTUtils_3D(final long slices, final long rows, final long columns)
{
this.slices = (int) slices;
this.rows = (int) rows;
this.columns = (int) columns;
this.rowStride = (int) columns;
this.sliceStride = (int) rows * (int) this.rowStride;
this.slicesl = slices;
this.rowsl = rows;
this.columnsl = columns;
this.rowStridel = columns;
this.sliceStridel = rows * this.rowStridel;
}
/**
*
* Returns the 1d index of the specified 3d Fourier mode. In other words, if
* packed contains the transformed data following a call to
* {@link DoubleFFT_3D#realForwardFull(double[])} or
* {@link FloatFFT_3D#realForward(float[])}, then the returned value
* index gives access to the [s][r][c] Fourier
* mode
*
* - if
index == {@link Integer#MIN_VALUE}, then the Fourier
* mode is zero,
* - if
index >= 0, then the Fourier mode is
* packed[index],
* - if
index < 0, then the Fourier mode is
* -packed[-index],
*
*
* @param s
* the slice index
* @param r
* the row index
* @param c
* the column index
*
* @return the value of index
*/
public int getIndex(final int s, final int r, final int c)
{
final int cmod2 = c & ONE;
final int rmul2 = r << ONE;
final int smul2 = s << ONE;
final int ss = s == ZERO ? ZERO : slices - s;
final int rr = r == ZERO ? ZERO : rows - r;
if (c <= ONE) {
if (r == ZERO) {
if (s == ZERO) {
return c == ZERO ? ZERO : Integer.MIN_VALUE;
} else if (smul2 < slices) {
return s * sliceStride + c;
} else if (smul2 > slices) {
final int index = ss * sliceStride;
return cmod2 == ZERO ? index : -(index + ONE);
} else {
return cmod2 == ZERO ? s * sliceStride : Integer.MIN_VALUE;
}
} else if (rmul2 < rows) {
return s * sliceStride + r * rowStride + c;
} else if (rmul2 > rows) {
final int index = ss * sliceStride + rr * rowStride;
return cmod2 == ZERO ? index : -(index + ONE);
} else {
if (s == ZERO) {
return cmod2 == ZERO ? r * rowStride : Integer.MIN_VALUE;
} else if (smul2 < slices) {
return s * sliceStride + r * rowStride + c;
} else if (smul2 > slices) {
final int index = ss * sliceStride + r * rowStride;
return cmod2 == ZERO ? index : -(index + ONE);
} else {
final int index = s * sliceStride + r * rowStride;
return cmod2 == ZERO ? index : Integer.MIN_VALUE;
}
}
} else if (c < columns) {
return s * sliceStride + r * rowStride + c;
} else if (c > columns + ONE) {
final int cc = (columns << ONE) - c;
final int index = ss * sliceStride + rr * rowStride + cc;
return cmod2 == ZERO ? index : -(index + TWO);
} else {
if (r == ZERO) {
if (s == ZERO) {
return cmod2 == ZERO ? ONE : Integer.MIN_VALUE;
} else if (smul2 < slices) {
final int index = ss * sliceStride;
return cmod2 == ZERO ? index + ONE : -index;
} else if (smul2 > slices) {
final int index = s * sliceStride;
return cmod2 == ZERO ? index + ONE : index;
} else {
final int index = s * sliceStride;
return cmod2 == ZERO ? index + ONE : Integer.MIN_VALUE;
}
} else if (rmul2 < rows) {
final int index = ss * sliceStride + rr * rowStride;
return cmod2 == ZERO ? index + ONE : -index;
} else if (rmul2 > rows) {
final int index = s * sliceStride + r * rowStride;
return cmod2 == ZERO ? index + ONE : index;
} else {
if (s == ZERO) {
final int index = r * rowStride + ONE;
return cmod2 == ZERO ? index : Integer.MIN_VALUE;
} else if (smul2 < slices) {
final int index = ss * sliceStride + r * rowStride;
return cmod2 == ZERO ? index + ONE : -index;
} else if (smul2 > slices) {
final int index = s * sliceStride + r * rowStride;
return cmod2 == ZERO ? index + ONE : index;
} else {
final int index = s * sliceStride + r * rowStride;
return cmod2 == ZERO ? index + ONE : Integer.MIN_VALUE;
}
}
}
}
/**
*
* Returns the 1d index of the specified 3d Fourier mode. In other words, if
* packed contains the transformed data following a call to
* {@link DoubleFFT_3D#realForwardFull(double[])} or
* {@link FloatFFT_3D#realForward(float[])}, then the returned value
* index gives access to the [s][r][c] Fourier
* mode
*
* - if
index == {@link Integer#MIN_VALUE}, then the Fourier
* mode is zero,
* - if
index >= 0, then the Fourier mode is
* packed[index],
* - if
index < 0, then the Fourier mode is
* -packed[-index],
*
*
* @param s
* the slice index
* @param r
* the row index
* @param c
* the column index
*
* @return the value of index
*/
public long getIndex(final long s, final long r, final long c)
{
final long cmod2 = c & ONEL;
final long rmul2 = r << ONEL;
final long smul2 = s << ONEL;
final long ss = s == ZEROL ? ZEROL : slicesl - s;
final long rr = r == ZEROL ? ZEROL : rowsl - r;
if (c <= ONEL) {
if (r == ZEROL) {
if (s == ZEROL) {
return c == ZEROL ? ZEROL : Long.MIN_VALUE;
} else if (smul2 < slicesl) {
return s * sliceStridel + c;
} else if (smul2 > slicesl) {
final long index = ss * sliceStridel;
return cmod2 == ZEROL ? index : -(index + ONEL);
} else {
return cmod2 == ZEROL ? s * sliceStridel : Long.MIN_VALUE;
}
} else if (rmul2 < rowsl) {
return s * sliceStridel + r * rowStridel + c;
} else if (rmul2 > rowsl) {
final long index = ss * sliceStridel + rr * rowStridel;
return cmod2 == ZEROL ? index : -(index + ONEL);
} else {
if (s == ZEROL) {
return cmod2 == ZEROL ? r * rowStridel : Long.MIN_VALUE;
} else if (smul2 < slicesl) {
return s * sliceStridel + r * rowStridel + c;
} else if (smul2 > slicesl) {
final long index = ss * sliceStridel + r * rowStridel;
return cmod2 == ZEROL ? index : -(index + ONEL);
} else {
final long index = s * sliceStridel + r * rowStridel;
return cmod2 == ZEROL ? index : Long.MIN_VALUE;
}
}
} else if (c < columnsl) {
return s * sliceStridel + r * rowStridel + c;
} else if (c > columnsl + ONEL) {
final long cc = (columnsl << ONEL) - c;
final long index = ss * sliceStridel + rr * rowStridel + cc;
return cmod2 == ZEROL ? index : -(index + TWO);
} else {
if (r == ZEROL) {
if (s == ZEROL) {
return cmod2 == ZEROL ? ONEL : Long.MIN_VALUE;
} else if (smul2 < slicesl) {
final long index = ss * sliceStridel;
return cmod2 == ZEROL ? index + ONEL : -index;
} else if (smul2 > slicesl) {
final long index = s * sliceStridel;
return cmod2 == ZEROL ? index + ONEL : index;
} else {
final long index = s * sliceStridel;
return cmod2 == ZEROL ? index + ONEL : Long.MIN_VALUE;
}
} else if (rmul2 < rowsl) {
final long index = ss * sliceStridel + rr * rowStridel;
return cmod2 == ZEROL ? index + ONEL : -index;
} else if (rmul2 > rowsl) {
final long index = s * sliceStridel + r * rowStridel;
return cmod2 == ZEROL ? index + ONEL : index;
} else {
if (s == ZEROL) {
final long index = r * rowStridel + ONEL;
return cmod2 == ZEROL ? index : Long.MIN_VALUE;
} else if (smul2 < slicesl) {
final long index = ss * sliceStridel + r * rowStridel;
return cmod2 == ZEROL ? index + ONEL : -index;
} else if (smul2 > slicesl) {
final long index = s * sliceStridel + r * rowStridel;
return cmod2 == ZEROL ? index + ONEL : index;
} else {
final long index = s * sliceStridel + r * rowStridel;
return cmod2 == ZEROL ? index + ONEL : Long.MIN_VALUE;
}
}
}
}
/**
* Sets the specified Fourier mode of the transformed data. The data array
* results from a call to {@link DoubleFFT_3D#realForward(double[])}.
*
* @param val
* the new value of the [s][r][c] Fourier mode
* @param s
* the slice index
* @param r
* the row index
* @param c
* the column index
* @param packed
* the transformed data
* @param pos
* index of the first element in array packed
*/
public void pack(final double val, final int s, final int r, final int c,
final double[] packed, final int pos)
{
final int i = getIndex(s, r, c);
if (i >= 0) {
packed[pos + i] = val;
} else if (i > Integer.MIN_VALUE) {
packed[pos - i] = -val;
} else {
throw new IllegalArgumentException(String.format(
"[%d][%d][%d] component cannot be modified (always zero)",
s, r, c));
}
}
/**
* Sets the specified Fourier mode of the transformed data. The data array
* results from a call to {@link DoubleFFT_3D#realForward(DoubleLargeArray)}.
*
* @param val
* the new value of the [s][r][c] Fourier mode
* @param s
* the slice index
* @param r
* the row index
* @param c
* the column index
* @param packed
* the transformed data
* @param pos
* index of the first element in array packed
*/
public void pack(final double val, final long s, final long r, final long c,
final DoubleLargeArray packed, final long pos)
{
final long i = getIndex(s, r, c);
if (i >= 0) {
packed.setDouble(pos + i, val);
} else if (i > Long.MIN_VALUE) {
packed.setDouble(pos - i, -val);
} else {
throw new IllegalArgumentException(String.format(
"[%d][%d][%d] component cannot be modified (always zero)",
s, r, c));
}
}
/**
* Sets the specified Fourier mode of the transformed data. The data array
* results from a call to {@link DoubleFFT_3D#realForward(double[][][])}.
*
* @param val
* the new value of the [s][r][c] Fourier mode
* @param s
* the slice index
* @param r
* the row index
* @param c
* the column index
* @param packed
* the transformed data
*/
public void pack(final double val, final int s, final int r, final int c,
final double[][][] packed)
{
final int i = getIndex(s, r, c);
final int ii = Math.abs(i);
final int ss = ii / sliceStride;
final int remainder = ii % sliceStride;
final int rr = remainder / rowStride;
final int cc = remainder % rowStride;
if (i >= 0) {
packed[ss][rr][cc] = val;
} else if (i > Integer.MIN_VALUE) {
packed[ss][rr][cc] = -val;
} else {
throw new IllegalArgumentException(
String.format(
"[%d][%d] component cannot be modified (always zero)",
r, c));
}
}
/**
* Sets the specified Fourier mode of the transformed data. The data array
* results from a call to {@link FloatFFT_3D#realForward(float[])}.
*
* @param val
* the new value of the [s][r][c] Fourier mode
* @param s
* the slice index
* @param r
* the row index
* @param c
* the column index
* @param packed
* the transformed data
* @param pos
* index of the first element in array packed
*/
public void pack(final float val, final int s, final int r, final int c,
final float[] packed, final int pos)
{
final int i = getIndex(s, r, c);
if (i >= 0) {
packed[pos + i] = val;
} else if (i > Integer.MIN_VALUE) {
packed[pos - i] = -val;
} else {
throw new IllegalArgumentException(String.format(
"[%d][%d][%d] component cannot be modified (always zero)",
s, r, c));
}
}
/**
* Sets the specified Fourier mode of the transformed data. The data array
* results from a call to {@link FloatFFT_3D#realForward(FloatLargeArray)}.
*
* @param val
* the new value of the [s][r][c] Fourier mode
* @param s
* the slice index
* @param r
* the row index
* @param c
* the column index
* @param packed
* the transformed data
* @param pos
* index of the first element in array packed
*/
public void pack(final float val, final long s, final long r, final long c,
final FloatLargeArray packed, final long pos)
{
final long i = getIndex(s, r, c);
if (i >= 0) {
packed.setFloat(pos + i, val);
} else if (i > Long.MIN_VALUE) {
packed.setFloat(pos - i, -val);
} else {
throw new IllegalArgumentException(String.format(
"[%d][%d][%d] component cannot be modified (always zero)",
s, r, c));
}
}
/**
* Sets the specified Fourier mode of the transformed data. The data array
* results from a call to {@link FloatFFT_3D#realForward(float[][][])}.
*
* @param val
* the new value of the [s][r][c] Fourier mode
* @param s
* the slice index
* @param r
* the row index
* @param c
* the column index
* @param packed
* the transformed data
*/
public void pack(final float val, final int s, final int r, final int c,
final float[][][] packed)
{
final int i = getIndex(s, r, c);
final int ii = Math.abs(i);
final int ss = ii / sliceStride;
final int remainder = ii % sliceStride;
final int rr = remainder / rowStride;
final int cc = remainder % rowStride;
if (i >= 0) {
packed[ss][rr][cc] = val;
} else if (i > Integer.MIN_VALUE) {
packed[ss][rr][cc] = -val;
} else {
throw new IllegalArgumentException(String.format(
"[%d][%d][%d] component cannot be modified (always zero)",
s, r, c));
}
}
/**
* Returns the specified Fourier mode of the transformed data. The data
* array results from a call to {@link DoubleFFT_3D#realForward(double[])}.
*
* @param s
* the slice index
* @param r
* the row index
* @param c
* the column index
* @param packed
* the transformed data
* @param pos
* index of the first element in array packed
*
* @return the value of the [s][r][c] Fourier mode
*/
public double unpack(final int s, final int r, final int c,
final double[] packed, final int pos)
{
final int i = getIndex(s, r, c);
if (i >= 0) {
return packed[pos + i];
} else if (i > Integer.MIN_VALUE) {
return -packed[pos - i];
} else {
return ZERO;
}
}
/**
* Returns the specified Fourier mode of the transformed data. The data
* array results from a call to {@link DoubleFFT_3D#realForward(DoubleLargeArray)}.
*
* @param s
* the slice index
* @param r
* the row index
* @param c
* the column index
* @param packed
* the transformed data
* @param pos
* index of the first element in array packed
*
* @return the value of the [s][r][c] Fourier mode
*/
public double unpack(final long s, final long r, final long c,
final DoubleLargeArray packed, final long pos)
{
final long i = getIndex(s, r, c);
if (i >= 0) {
return packed.getDouble(pos + i);
} else if (i > Long.MIN_VALUE) {
return -packed.getDouble(pos - i);
} else {
return ZEROL;
}
}
/**
* Returns the specified Fourier mode of the transformed data. The data
* array results from a call to
* {@link DoubleFFT_3D#realForward(double[][][])} .
*
* @param s
* the slice index
* @param r
* the row index
* @param c
* the column index
* @param packed
* the transformed data
*
* @return the value of the [s][r][c] Fourier mode
*/
public double unpack(final int s, final int r, final int c,
final double[][][] packed)
{
final int i = getIndex(s, r, c);
final int ii = Math.abs(i);
final int ss = ii / sliceStride;
final int remainder = ii % sliceStride;
final int rr = remainder / rowStride;
final int cc = remainder % rowStride;
if (i >= 0) {
return packed[ss][rr][cc];
} else if (i > Integer.MIN_VALUE) {
return -packed[ss][rr][cc];
} else {
return ZERO;
}
}
/**
* Returns the specified Fourier mode of the transformed data. The data
* array results from a call to {@link FloatFFT_3D#realForward(float[])} .
*
* @param s
* the slice index
* @param r
* the row index
* @param c
* the column index
* @param packed
* the transformed data
* @param pos
* index of the first element in array packed
*
* @return the value of the [s][r][c] Fourier mode
*/
public float unpack(final int s, final int r, final int c,
final float[] packed, final int pos)
{
final int i = getIndex(s, r, c);
if (i >= 0) {
return packed[pos + i];
} else if (i > Integer.MIN_VALUE) {
return -packed[pos - i];
} else {
return ZERO;
}
}
/**
* Returns the specified Fourier mode of the transformed data. The data
* array results from a call to {@link FloatFFT_3D#realForward(FloatLargeArray)} .
*
* @param s
* the slice index
* @param r
* the row index
* @param c
* the column index
* @param packed
* the transformed data
* @param pos
* index of the first element in array packed
*
* @return the value of the [s][r][c] Fourier mode
*/
public float unpack(final long s, final long r, final long c,
final FloatLargeArray packed, final long pos)
{
final long i = getIndex(s, r, c);
if (i >= 0) {
return packed.getFloat(pos + i);
} else if (i > Long.MIN_VALUE) {
return -packed.getFloat(pos - i);
} else {
return ZEROL;
}
}
/**
* Returns the specified Fourier mode of the transformed data. The data
* array results from a call to {@link FloatFFT_3D#realForward(float[][][])}
* .
*
* @param s
* the slice index
* @param r
* the row index
* @param c
* the column index
* @param packed
* the transformed data
*
* @return the value of the [s][r][c] Fourier mode
*/
public float unpack(final int s, final int r, final int c,
final float[][][] packed)
{
final int i = getIndex(s, r, c);
final int ii = Math.abs(i);
final int ss = ii / sliceStride;
final int remainder = ii % sliceStride;
final int rr = remainder / rowStride;
final int cc = remainder % rowStride;
if (i >= 0) {
return packed[ss][rr][cc];
} else if (i > Integer.MIN_VALUE) {
return -packed[ss][rr][cc];
} else {
return ZERO;
}
}
}
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