com.google.api.services.genomics.model.ReadGroup Maven / Gradle / Ivy
/*
* Copyright 2010 Google Inc.
*
* Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except
* in compliance with the License. You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software distributed under the License
* is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express
* or implied. See the License for the specific language governing permissions and limitations under
* the License.
*/
/*
* This code was generated by https://github.com/google/apis-client-generator/
* (build: 2016-05-27 16:00:31 UTC)
* on 2016-07-28 at 21:58:52 UTC
* Modify at your own risk.
*/
package com.google.api.services.genomics.model;
/**
* A read group is all the data that's processed the same way by the sequencer.
*
* This is the Java data model class that specifies how to parse/serialize into the JSON that is
* transmitted over HTTP when working with the Genomics API. For a detailed explanation see:
* https://developers.google.com/api-client-library/java/google-http-java-client/json
*
*
* @author Google, Inc.
*/
@SuppressWarnings("javadoc")
public final class ReadGroup extends com.google.api.client.json.GenericJson {
/**
* The dataset to which this read group belongs.
* The value may be {@code null}.
*/
@com.google.api.client.util.Key
private java.lang.String datasetId;
/**
* A free-form text description of this read group.
* The value may be {@code null}.
*/
@com.google.api.client.util.Key
private java.lang.String description;
/**
* The experiment used to generate this read group.
* The value may be {@code null}.
*/
@com.google.api.client.util.Key
private Experiment experiment;
/**
* The server-generated read group ID, unique for all read groups. Note: This is different than
* the @RG ID field in the SAM spec. For that value, see name.
* The value may be {@code null}.
*/
@com.google.api.client.util.Key
private java.lang.String id;
/**
* A map of additional read group information. This must be of the form map (string key mapping to
* a list of string values).
* The value may be {@code null}.
*/
@com.google.api.client.util.Key
private java.util.Map> info;
/**
* The read group name. This corresponds to the @RG ID field in the SAM spec.
* The value may be {@code null}.
*/
@com.google.api.client.util.Key
private java.lang.String name;
/**
* The predicted insert size of this read group. The insert size is the length the sequenced DNA
* fragment from end-to-end, not including the adapters.
* The value may be {@code null}.
*/
@com.google.api.client.util.Key
private java.lang.Integer predictedInsertSize;
/**
* The programs used to generate this read group. Programs are always identical for all read
* groups within a read group set. For this reason, only the first read group in a returned set
* will have this field populated.
* The value may be {@code null}.
*/
@com.google.api.client.util.Key
private java.util.List programs;
/**
* The reference set the reads in this read group are aligned to.
* The value may be {@code null}.
*/
@com.google.api.client.util.Key
private java.lang.String referenceSetId;
/**
* A client-supplied sample identifier for the reads in this read group.
* The value may be {@code null}.
*/
@com.google.api.client.util.Key
private java.lang.String sampleId;
/**
* The dataset to which this read group belongs.
* @return value or {@code null} for none
*/
public java.lang.String getDatasetId() {
return datasetId;
}
/**
* The dataset to which this read group belongs.
* @param datasetId datasetId or {@code null} for none
*/
public ReadGroup setDatasetId(java.lang.String datasetId) {
this.datasetId = datasetId;
return this;
}
/**
* A free-form text description of this read group.
* @return value or {@code null} for none
*/
public java.lang.String getDescription() {
return description;
}
/**
* A free-form text description of this read group.
* @param description description or {@code null} for none
*/
public ReadGroup setDescription(java.lang.String description) {
this.description = description;
return this;
}
/**
* The experiment used to generate this read group.
* @return value or {@code null} for none
*/
public Experiment getExperiment() {
return experiment;
}
/**
* The experiment used to generate this read group.
* @param experiment experiment or {@code null} for none
*/
public ReadGroup setExperiment(Experiment experiment) {
this.experiment = experiment;
return this;
}
/**
* The server-generated read group ID, unique for all read groups. Note: This is different than
* the @RG ID field in the SAM spec. For that value, see name.
* @return value or {@code null} for none
*/
public java.lang.String getId() {
return id;
}
/**
* The server-generated read group ID, unique for all read groups. Note: This is different than
* the @RG ID field in the SAM spec. For that value, see name.
* @param id id or {@code null} for none
*/
public ReadGroup setId(java.lang.String id) {
this.id = id;
return this;
}
/**
* A map of additional read group information. This must be of the form map (string key mapping to
* a list of string values).
* @return value or {@code null} for none
*/
public java.util.Map> getInfo() {
return info;
}
/**
* A map of additional read group information. This must be of the form map (string key mapping to
* a list of string values).
* @param info info or {@code null} for none
*/
public ReadGroup setInfo(java.util.Map> info) {
this.info = info;
return this;
}
/**
* The read group name. This corresponds to the @RG ID field in the SAM spec.
* @return value or {@code null} for none
*/
public java.lang.String getName() {
return name;
}
/**
* The read group name. This corresponds to the @RG ID field in the SAM spec.
* @param name name or {@code null} for none
*/
public ReadGroup setName(java.lang.String name) {
this.name = name;
return this;
}
/**
* The predicted insert size of this read group. The insert size is the length the sequenced DNA
* fragment from end-to-end, not including the adapters.
* @return value or {@code null} for none
*/
public java.lang.Integer getPredictedInsertSize() {
return predictedInsertSize;
}
/**
* The predicted insert size of this read group. The insert size is the length the sequenced DNA
* fragment from end-to-end, not including the adapters.
* @param predictedInsertSize predictedInsertSize or {@code null} for none
*/
public ReadGroup setPredictedInsertSize(java.lang.Integer predictedInsertSize) {
this.predictedInsertSize = predictedInsertSize;
return this;
}
/**
* The programs used to generate this read group. Programs are always identical for all read
* groups within a read group set. For this reason, only the first read group in a returned set
* will have this field populated.
* @return value or {@code null} for none
*/
public java.util.List getPrograms() {
return programs;
}
/**
* The programs used to generate this read group. Programs are always identical for all read
* groups within a read group set. For this reason, only the first read group in a returned set
* will have this field populated.
* @param programs programs or {@code null} for none
*/
public ReadGroup setPrograms(java.util.List programs) {
this.programs = programs;
return this;
}
/**
* The reference set the reads in this read group are aligned to.
* @return value or {@code null} for none
*/
public java.lang.String getReferenceSetId() {
return referenceSetId;
}
/**
* The reference set the reads in this read group are aligned to.
* @param referenceSetId referenceSetId or {@code null} for none
*/
public ReadGroup setReferenceSetId(java.lang.String referenceSetId) {
this.referenceSetId = referenceSetId;
return this;
}
/**
* A client-supplied sample identifier for the reads in this read group.
* @return value or {@code null} for none
*/
public java.lang.String getSampleId() {
return sampleId;
}
/**
* A client-supplied sample identifier for the reads in this read group.
* @param sampleId sampleId or {@code null} for none
*/
public ReadGroup setSampleId(java.lang.String sampleId) {
this.sampleId = sampleId;
return this;
}
@Override
public ReadGroup set(String fieldName, Object value) {
return (ReadGroup) super.set(fieldName, value);
}
@Override
public ReadGroup clone() {
return (ReadGroup) super.clone();
}
}
© 2015 - 2025 Weber Informatics LLC | Privacy Policy