com.google.api.services.genomics.model.ReadGroupSet Maven / Gradle / Ivy

Go to download
Show more of this group Show more artifacts with this name
Show all versions of google-api-services-genomics Show documentation
There is a newer version: v2alpha1-rev20220913-2.0.0
Show newest version
/*
 * Copyright 2010 Google Inc.
 *
 * Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except
 * in compliance with the License. You may obtain a copy of the License at
 *
 * http://www.apache.org/licenses/LICENSE-2.0
 *
 * Unless required by applicable law or agreed to in writing, software distributed under the License
 * is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express
 * or implied. See the License for the specific language governing permissions and limitations under
 * the License.
 */
/*
 * This code was generated by https://github.com/google/apis-client-generator/
 * (build: 2016-05-27 16:00:31 UTC)
 * on 2016-07-28 at 21:58:52 UTC 
 * Modify at your own risk.
 */

package com.google.api.services.genomics.model;

/**
 * A read group set is a logical collection of read groups, which are collections of reads produced
 * by a sequencer. A read group set typically models reads corresponding to one sample, sequenced
 * one way, and aligned one way. * A read group set belongs to one dataset. * A read group belongs
 * to one read group set. * A read belongs to one read group. For more genomics resource
 * definitions, see [Fundamentals of Google Genomics](https://cloud.google.com/genomics
 * /fundamentals-of-google-genomics)
 *
 *  This is the Java data model class that specifies how to parse/serialize into the JSON that is
 * transmitted over HTTP when working with the Genomics API. For a detailed explanation see:
 * https://developers.google.com/api-client-library/java/google-http-java-client/json
 * 
 *
 * @author Google, Inc.
 */
@SuppressWarnings("javadoc")
public final class ReadGroupSet extends com.google.api.client.json.GenericJson {

  /**
   * The dataset to which this read group set belongs.
   * The value may be {@code null}.
   */
  @com.google.api.client.util.Key
  private java.lang.String datasetId;

  /**
   * The filename of the original source file for this read group set, if any.
   * The value may be {@code null}.
   */
  @com.google.api.client.util.Key
  private java.lang.String filename;

  /**
   * The server-generated read group set ID, unique for all read group sets.
   * The value may be {@code null}.
   */
  @com.google.api.client.util.Key
  private java.lang.String id;

  /**
   * A map of additional read group set information.
   * The value may be {@code null}.
   */
  @com.google.api.client.util.Key
  private java.util.Map> info;

  /**
   * The read group set name. By default this will be initialized to the sample name of the
   * sequenced data contained in this set.
   * The value may be {@code null}.
   */
  @com.google.api.client.util.Key
  private java.lang.String name;

  /**
   * The read groups in this set. There are typically 1-10 read groups in a read group set.
   * The value may be {@code null}.
   */
  @com.google.api.client.util.Key
  private java.util.List readGroups;

  /**
   * The reference set to which the reads in this read group set are aligned.
   * The value may be {@code null}.
   */
  @com.google.api.client.util.Key
  private java.lang.String referenceSetId;

  /**
   * The dataset to which this read group set belongs.
   * @return value or {@code null} for none
   */
  public java.lang.String getDatasetId() {
    return datasetId;
  }

  /**
   * The dataset to which this read group set belongs.
   * @param datasetId datasetId or {@code null} for none
   */
  public ReadGroupSet setDatasetId(java.lang.String datasetId) {
    this.datasetId = datasetId;
    return this;
  }

  /**
   * The filename of the original source file for this read group set, if any.
   * @return value or {@code null} for none
   */
  public java.lang.String getFilename() {
    return filename;
  }

  /**
   * The filename of the original source file for this read group set, if any.
   * @param filename filename or {@code null} for none
   */
  public ReadGroupSet setFilename(java.lang.String filename) {
    this.filename = filename;
    return this;
  }

  /**
   * The server-generated read group set ID, unique for all read group sets.
   * @return value or {@code null} for none
   */
  public java.lang.String getId() {
    return id;
  }

  /**
   * The server-generated read group set ID, unique for all read group sets.
   * @param id id or {@code null} for none
   */
  public ReadGroupSet setId(java.lang.String id) {
    this.id = id;
    return this;
  }

  /**
   * A map of additional read group set information.
   * @return value or {@code null} for none
   */
  public java.util.Map> getInfo() {
    return info;
  }

  /**
   * A map of additional read group set information.
   * @param info info or {@code null} for none
   */
  public ReadGroupSet setInfo(java.util.Map> info) {
    this.info = info;
    return this;
  }

  /**
   * The read group set name. By default this will be initialized to the sample name of the
   * sequenced data contained in this set.
   * @return value or {@code null} for none
   */
  public java.lang.String getName() {
    return name;
  }

  /**
   * The read group set name. By default this will be initialized to the sample name of the
   * sequenced data contained in this set.
   * @param name name or {@code null} for none
   */
  public ReadGroupSet setName(java.lang.String name) {
    this.name = name;
    return this;
  }

  /**
   * The read groups in this set. There are typically 1-10 read groups in a read group set.
   * @return value or {@code null} for none
   */
  public java.util.List getReadGroups() {
    return readGroups;
  }

  /**
   * The read groups in this set. There are typically 1-10 read groups in a read group set.
   * @param readGroups readGroups or {@code null} for none
   */
  public ReadGroupSet setReadGroups(java.util.List readGroups) {
    this.readGroups = readGroups;
    return this;
  }

  /**
   * The reference set to which the reads in this read group set are aligned.
   * @return value or {@code null} for none
   */
  public java.lang.String getReferenceSetId() {
    return referenceSetId;
  }

  /**
   * The reference set to which the reads in this read group set are aligned.
   * @param referenceSetId referenceSetId or {@code null} for none
   */
  public ReadGroupSet setReferenceSetId(java.lang.String referenceSetId) {
    this.referenceSetId = referenceSetId;
    return this;
  }

  @Override
  public ReadGroupSet set(String fieldName, Object value) {
    return (ReadGroupSet) super.set(fieldName, value);
  }

  @Override
  public ReadGroupSet clone() {
    return (ReadGroupSet) super.clone();
  }

}