com.google.api.services.genomics.model.VariantSet Maven / Gradle / Ivy
/*
* Copyright 2010 Google Inc.
*
* Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except
* in compliance with the License. You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software distributed under the License
* is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express
* or implied. See the License for the specific language governing permissions and limitations under
* the License.
*/
/*
* This code was generated by https://github.com/google/apis-client-generator/
* (build: 2016-05-27 16:00:31 UTC)
* on 2016-07-28 at 21:58:52 UTC
* Modify at your own risk.
*/
package com.google.api.services.genomics.model;
/**
* A variant set is a collection of call sets and variants. It contains summary statistics of those
* contents. A variant set belongs to a dataset. For more genomics resource definitions, see
* [Fundamentals of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-google-
* genomics)
*
* This is the Java data model class that specifies how to parse/serialize into the JSON that is
* transmitted over HTTP when working with the Genomics API. For a detailed explanation see:
* https://developers.google.com/api-client-library/java/google-http-java-client/json
*
*
* @author Google, Inc.
*/
@SuppressWarnings("javadoc")
public final class VariantSet extends com.google.api.client.json.GenericJson {
/**
* The dataset to which this variant set belongs.
* The value may be {@code null}.
*/
@com.google.api.client.util.Key
private java.lang.String datasetId;
/**
* A textual description of this variant set.
* The value may be {@code null}.
*/
@com.google.api.client.util.Key
private java.lang.String description;
/**
* The server-generated variant set ID, unique across all variant sets.
* The value may be {@code null}.
*/
@com.google.api.client.util.Key
private java.lang.String id;
/**
* The metadata associated with this variant set.
* The value may be {@code null}.
*/
@com.google.api.client.util.Key
private java.util.List metadata;
/**
* User-specified, mutable name.
* The value may be {@code null}.
*/
@com.google.api.client.util.Key
private java.lang.String name;
/**
* A list of all references used by the variants in a variant set with associated coordinate upper
* bounds for each one.
* The value may be {@code null}.
*/
@com.google.api.client.util.Key
private java.util.List referenceBounds;
/**
* The reference set to which the variant set is mapped. The reference set describes the alignment
* provenance of the variant set, while the `referenceBounds` describe the shape of the actual
* variant data. The reference set's reference names are a superset of those found in the
* `referenceBounds`. For example, given a variant set that is mapped to the GRCh38 reference set
* and contains a single variant on reference 'X', `referenceBounds` would contain only an entry
* for 'X', while the associated reference set enumerates all possible references: '1', '2', 'X',
* 'Y', 'MT', etc.
* The value may be {@code null}.
*/
@com.google.api.client.util.Key
private java.lang.String referenceSetId;
/**
* The dataset to which this variant set belongs.
* @return value or {@code null} for none
*/
public java.lang.String getDatasetId() {
return datasetId;
}
/**
* The dataset to which this variant set belongs.
* @param datasetId datasetId or {@code null} for none
*/
public VariantSet setDatasetId(java.lang.String datasetId) {
this.datasetId = datasetId;
return this;
}
/**
* A textual description of this variant set.
* @return value or {@code null} for none
*/
public java.lang.String getDescription() {
return description;
}
/**
* A textual description of this variant set.
* @param description description or {@code null} for none
*/
public VariantSet setDescription(java.lang.String description) {
this.description = description;
return this;
}
/**
* The server-generated variant set ID, unique across all variant sets.
* @return value or {@code null} for none
*/
public java.lang.String getId() {
return id;
}
/**
* The server-generated variant set ID, unique across all variant sets.
* @param id id or {@code null} for none
*/
public VariantSet setId(java.lang.String id) {
this.id = id;
return this;
}
/**
* The metadata associated with this variant set.
* @return value or {@code null} for none
*/
public java.util.List getMetadata() {
return metadata;
}
/**
* The metadata associated with this variant set.
* @param metadata metadata or {@code null} for none
*/
public VariantSet setMetadata(java.util.List metadata) {
this.metadata = metadata;
return this;
}
/**
* User-specified, mutable name.
* @return value or {@code null} for none
*/
public java.lang.String getName() {
return name;
}
/**
* User-specified, mutable name.
* @param name name or {@code null} for none
*/
public VariantSet setName(java.lang.String name) {
this.name = name;
return this;
}
/**
* A list of all references used by the variants in a variant set with associated coordinate upper
* bounds for each one.
* @return value or {@code null} for none
*/
public java.util.List getReferenceBounds() {
return referenceBounds;
}
/**
* A list of all references used by the variants in a variant set with associated coordinate upper
* bounds for each one.
* @param referenceBounds referenceBounds or {@code null} for none
*/
public VariantSet setReferenceBounds(java.util.List referenceBounds) {
this.referenceBounds = referenceBounds;
return this;
}
/**
* The reference set to which the variant set is mapped. The reference set describes the alignment
* provenance of the variant set, while the `referenceBounds` describe the shape of the actual
* variant data. The reference set's reference names are a superset of those found in the
* `referenceBounds`. For example, given a variant set that is mapped to the GRCh38 reference set
* and contains a single variant on reference 'X', `referenceBounds` would contain only an entry
* for 'X', while the associated reference set enumerates all possible references: '1', '2', 'X',
* 'Y', 'MT', etc.
* @return value or {@code null} for none
*/
public java.lang.String getReferenceSetId() {
return referenceSetId;
}
/**
* The reference set to which the variant set is mapped. The reference set describes the alignment
* provenance of the variant set, while the `referenceBounds` describe the shape of the actual
* variant data. The reference set's reference names are a superset of those found in the
* `referenceBounds`. For example, given a variant set that is mapped to the GRCh38 reference set
* and contains a single variant on reference 'X', `referenceBounds` would contain only an entry
* for 'X', while the associated reference set enumerates all possible references: '1', '2', 'X',
* 'Y', 'MT', etc.
* @param referenceSetId referenceSetId or {@code null} for none
*/
public VariantSet setReferenceSetId(java.lang.String referenceSetId) {
this.referenceSetId = referenceSetId;
return this;
}
@Override
public VariantSet set(String fieldName, Object value) {
return (VariantSet) super.set(fieldName, value);
}
@Override
public VariantSet clone() {
return (VariantSet) super.clone();
}
}
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