com.google.cloud.bigtable.beam.sequencefiles.HBaseResultToMutationFn Maven / Gradle / Ivy
/*
* Copyright 2017 Google Inc. All Rights Reserved.
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*/
package com.google.cloud.bigtable.beam.sequencefiles;
import com.google.api.client.util.Lists;
import com.google.common.annotations.VisibleForTesting;
import com.google.common.base.Function;
import com.google.common.base.Predicate;
import com.google.common.base.Predicates;
import com.google.common.collect.Iterables;
import com.google.common.collect.Multimaps;
import java.util.Collection;
import java.util.Collections;
import java.util.Iterator;
import java.util.List;
import java.util.Map;
import org.apache.beam.sdk.transforms.DoFn;
import org.apache.beam.sdk.values.KV;
import org.apache.hadoop.hbase.Cell;
import org.apache.hadoop.hbase.CellUtil;
import org.apache.hadoop.hbase.client.Mutation;
import org.apache.hadoop.hbase.client.Put;
import org.apache.hadoop.hbase.client.Result;
import org.apache.hadoop.hbase.io.ImmutableBytesWritable;
import org.apache.hadoop.hbase.util.Bytes;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
/**
* A {@link DoFn} function that converts a {@link Result} in the pipeline input to a
* {@link Mutation} for output.
*/
class HBaseResultToMutationFn
extends DoFn, Mutation> {
private static Logger logger = LoggerFactory.getLogger(HBaseResultToMutationFn.class);
private static final long serialVersionUID = 1L;
private static final int MAX_CELLS = 100_000;
private static final Predicate IS_DELETE_MARKER_FILTER = new Predicate() {
@Override
public boolean apply(Cell cell) {
return CellUtil.isDelete(cell);
}
};
private static final Function COLUMN_FAMILY_EXTRACTOR =
new Function() {
@Override
public String apply(Cell cell) {
return Bytes.toString(CellUtil.cloneFamily(cell));
}
};
private static final DataCellPredicateFactory DATA_CELL_PREDICATE_FACTORY =
new DataCellPredicateFactory();
private transient boolean isEmptyRowWarned;
@VisibleForTesting
static void setLogger(Logger log) {
logger = log;
}
@ProcessElement
public void processElement(ProcessContext context) throws Exception {
KV kv = context.element();
List cells = checkEmptyRow(kv);
if (cells.isEmpty()) {
return;
}
// Preprocess delete markers
if (hasDeleteMarkers(cells)) {
cells = preprocessDeleteMarkers(cells);
}
// Split the row into multiple puts if it exceeds the maximum mutation limit
Iterator cellIt = cells.iterator();
while(cellIt.hasNext()) {
Put put = new Put(kv.getKey().get());
for(int i=0; i < MAX_CELLS && cellIt.hasNext(); i++) {
put.add(cellIt.next());
}
context.output(put);
}
}
private boolean hasDeleteMarkers(List cells) {
for (Cell cell : cells) {
if (CellUtil.isDelete(cell)) {
return true;
}
}
return false;
}
// Process
private List preprocessDeleteMarkers(List cells) {
List resultCells = Lists.newArrayList();
// Group cells by column family, since DeleteMarkers do not apply across families.
Map> dataCellsByFamilyMap =
Multimaps.index(
Iterables.filter(cells, Predicates.not(IS_DELETE_MARKER_FILTER)),
COLUMN_FAMILY_EXTRACTOR).asMap();
Map> deleteMarkersByFamilyMap =
Multimaps.index(
Iterables.filter(cells, IS_DELETE_MARKER_FILTER), COLUMN_FAMILY_EXTRACTOR).asMap();
for (Map.Entry> e : dataCellsByFamilyMap.entrySet()) {
processOneColumnFamily(resultCells, e.getValue(), deleteMarkersByFamilyMap.get(e.getKey()));
}
return resultCells;
}
private void processOneColumnFamily(
List resultCells, Collection dataCells, Collection deleteMarkers) {
if (deleteMarkers == null) {
// No markers for this column family
resultCells.addAll(dataCells);
} else {
// Build a filter for live data cells that should be sent to bigtable.
// These are cells not marked by any delete markers in this row/family.
Predicate liveDataCellPredicate =
Predicates.not(Predicates.or(Lists.newArrayList(
Iterables.transform(deleteMarkers, DATA_CELL_PREDICATE_FACTORY))));
for (Cell cell : dataCells) {
if (liveDataCellPredicate.apply(cell)) {
resultCells.add(cell);
}
}
}
}
// Warns about empty row on first occurrence only and replaces a null array with 0-length one.
private List checkEmptyRow(KV kv) {
List cells = kv.getValue().listCells();
if (cells == null) {
cells = Collections.emptyList();
}
if (!isEmptyRowWarned && cells.isEmpty()) {
logger.warn("Encountered empty row. Was input file serialized by HBase 0.94?");
isEmptyRowWarned = true;
}
return cells;
}
}
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