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Graph definitions and algorithms.
package com.googlecode.blaisemath.graph.generate;
/*
* #%L
* BlaiseGraphTheory
* --
* Copyright (C) 2009 - 2019 Elisha Peterson
* --
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
* #L%
*/
import com.google.common.graph.Graph;
import com.googlecode.blaisemath.graph.GraphGenerator;
import com.googlecode.blaisemath.graph.generate.WattsStrogatzGenerator.WattsStrogatzParameters;
import java.util.*;
import java.util.logging.Level;
import java.util.logging.Logger;
import static com.google.common.base.Preconditions.checkArgument;
/**
* Generates a Watts-Strogatz Random Graph.
*
* @author Elisha Peterson
*/
public final class WattsStrogatzGenerator implements GraphGenerator {
private final Random seed;
public WattsStrogatzGenerator() {
this(null);
}
public WattsStrogatzGenerator(Random seed) {
this.seed = seed;
}
@Override
public String toString() {
return "Watts-Strogatz Graph";
}
@Override
public WattsStrogatzParameters createParameters() {
return new WattsStrogatzParameters();
}
@Override
public Graph apply(WattsStrogatzParameters parameters) {
int nodeCount = parameters.getNodeCount();
int deg = parameters.getInitialDegree();
double rewire = parameters.getRewiringProbability();
List edges = new ArrayList<>();
for (int i = 0; i < nodeCount; i++) {
for (int off = 1; off <= (deg / 2); off++) {
edges.add(new Integer[]{i, (i + off) % nodeCount});
}
}
// generate list of edges to rewire
Random r = seed == null ? new Random() : seed;
for (Integer[] e : edges) {
if (r.nextDouble() < rewire) {
randomlyRewire(r, edges, e, nodeCount);
}
}
return GraphGenerators.createGraphWithEdges(parameters, edges);
}
//region ALGORITHM
/**
* Randomly rewires the specified edge, by randomly moving one of the edge's
* endpoints, provided the resulting edge does not already exist in the set.
* @param random random seed
* @param edges current list of edges
* @param e the edge to rewire
* @param n total # of nodes
*/
private static void randomlyRewire(Random random, List edges, Integer[] e, int n) {
if (n <= 1) {
return;
}
Integer[] potential = new Integer[]{e[0], e[1]};
Set edgeTree = new TreeSet<>(EdgeCountGenerator.PAIR_COMPARE_UNDIRECTED);
edgeTree.addAll(edges);
while (edgeTree.contains(potential)) {
if (random.nextBoolean()) {
potential = new Integer[]{e[0], randomNot(random, e[0], n)};
} else {
potential = new Integer[]{randomNot(random, e[1], n), e[1]};
}
}
e[0] = potential[0];
e[1] = potential[1];
}
/**
* Get a random value between 0 and n-1, other than exclude.
*/
private static int randomNot(Random seed, int exclude, int n) {
int result;
do {
result = seed.nextInt(n);
} while (result == exclude);
return result;
}
//endregion
//region PARAMETERS CLASS
/** Parameters for Watts-Strogatz algorithm */
@SuppressWarnings("WeakerAccess")
public static final class WattsStrogatzParameters extends DefaultGeneratorParameters {
private int deg = 4;
private float rewire = .5f;
public WattsStrogatzParameters() {
}
public WattsStrogatzParameters(boolean directed, int nodes, int deg, float rewiring) {
super(directed, nodes);
setInitialDegree(deg);
setRewiringProbability(rewiring);
}
public int getInitialDegree() {
return deg;
}
public void setInitialDegree(int deg) {
checkArgument(deg >= 0 && deg <= nodeCount-1, "Degree outside of range [0, " + (nodeCount - 1) + "]");
if (deg % 2 != 0) {
Logger.getLogger(WattsStrogatzGenerator.class.getName()).log(Level.WARNING,
"Degree must be an even integer: changing from {0} to {1}", new Object[]{deg, deg - 1});
this.deg = deg-1;
} else {
this.deg = deg;
}
}
public float getRewiringProbability() {
return rewire;
}
public void setRewiringProbability(float rewire) {
checkArgument(rewire >= 0 && rewire <= 1, "Invalid rewiring parameter = " + rewire + " (should be between 0 and 1)");
this.rewire = rewire;
}
}
//endregion
}
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