
tri.util.ml.AffinityClusterService.kt Maven / Gradle / Ivy
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package tri.util.ml
import com.clust4j.algo.AffinityPropagation
import com.clust4j.algo.AffinityPropagationParameters
import org.apache.commons.math3.linear.Array2DRowRealMatrix
import tri.util.info
/** Clustering service using Affinity Propagation. */
class AffinityClusterService : ClusterService {
override fun cluster(items: List, op: (T) -> List): List> {
val indexedItems = items.map { op(it).toDoubleArray() }
val obsMatrix = Array2DRowRealMatrix(indexedItems.toTypedArray())
try {
val aff: AffinityPropagation = AffinityPropagationParameters()
.fitNewModel(obsMatrix)
val labels = aff.labels
val itemClusters = items.withIndex().groupBy { labels[it.index] }
.mapValues { it.value.map { it.value } }
info("Computed ${aff.numberOfIdentifiedClusters} clusters of ${items.size} items")
info(" > cluster sizes: ${itemClusters.values.map { it.size }}")
return itemClusters.values.toList()
} catch (ex: Exception) {
ex.printStackTrace()
return listOf()
}
}
}
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