org.jcamp.spectrum.Fluorescence2DSpectrum Maven / Gradle / Ivy

Go to download
Show more of this group Show more artifacts with this name
Show all versions of jcamp-dx Show documentation
The JCAMP-DX project is the reference implemention of the IUPAC JCAMP-DX spectroscopy data standard.
The newest version!
package org.jcamp.spectrum;

import org.jcamp.math.Range1D;
import org.jcamp.math.Range3D;

/**
 * 2D fluorescence spectrum.
 * 
 * @author Thomas Weber
 */
public class Fluorescence2DSpectrum
  extends Spectrum2D {

  /** for serialization. */
  private static final long serialVersionUID = 4740198302960594909L;

  /**
   * FluorescenceSpectrum.
   *
   */
  public Fluorescence2DSpectrum(IOrderedDataArray1D x, IOrderedDataArray1D y, IDataArray1D z) {
    super(x, y, z);
    setFullSpectrum(true);
    adjustFullViewRange();
  }

  /**
   * adjust data ranges for pretty full spectrum view
   */
  private void adjustFullViewRange() {
    if (isFullSpectrum()) {
      Range1D.Double xrange = getXData().getRange1D();
      /*		double w = xrange.getWidth();
            		xrange.left -= 0.05 * w;
            		xrange.right += 0.05 * w; */
      setXFullViewRange(xrange);
      Range1D.Double yrange = getYData().getRange1D();
      /*		w = yrange.getWidth();
            		yrange.left -= 0.05 * w;
            		yrange.right += 0.05 * w; */
      setYFullViewRange(yrange);
      Range1D.Double zrange = getZData().getRange1D();
      /*		w = zrange.getWidth();
            		zrange.right += 0.05 * w;
            		zrange.left -= 0.05 * w; */
      setZFullViewRange(zrange);

    } else {
      /* include 0.0 in y-range and add 5% on to all borders */
      /*
            		Range1D xrange = getXData().getRange();
            		double w = xrange.getWidth();
            		xrange.left -= 0.05 * w;
            		xrange.right += 0.05 * w;
            		setFullViewRangeX(xrange);
            		Range1D yrange = getYData().getRange();
            		yrange.left = Math.min(yrange.left, 0.0);
            		yrange.right = Math.max(yrange.right, 0.0);
            		w = yrange.getWidth();
            		if (yrange.left == 0.0) {
            			yrange.right += 0.05 * w;
            		} else {
            			yrange.left -= 0.05 * w;
            		}
            		setFullViewRangeY(yrange);
       */
    }
  }

  /**
   * gets spectrum data range.
   */
  @Override
  public Range3D.Double getDataRange() {
    return new Range3D.Double(xAxisMap.getDataRange(), yAxisMap.getDataRange(), zAxisMap.getDataRange());
  }

  /**
   * gets emission spectrum at position index
   * @return com.labcontrol.spectrum.FluorescenceSpectrum
   * @param index int
   */
  public FluorescenceSpectrum getEmissionSpectrum(int index) {
    throw new RuntimeException("not implemented");
  }

  /**
   * gets excitation spectrum at position index
   * @return com.labcontrol.spectrum.FluorescenceSpectrum
   * @param index int
   */
  public FluorescenceSpectrum getExcitationSpectrum(int index) {
    throw new RuntimeException("not implemented");
  }

  /**
   * gets spectrum ID.
   * @return int
   */
  @Override
  public int getIdentifier() {
    return ISpectrumIdentifier.FLUORESCENCE2D;
  }

  /**
   * isSameType method comment.
   */
  @Override
  public boolean isSameType(Spectrum otherSpectrum) {
    if (otherSpectrum instanceof NMRSpectrum)
      return true;
    return false;
  }
}