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com.hfg xml, html, svg, and bioinformatics utility library

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package com.hfg.bio.proteinproperty;


import com.hfg.bio.HfgBioXML;
import com.hfg.util.StringUtil;
import com.hfg.xml.XMLTag;

//------------------------------------------------------------------------------
/**
 Protein analysis modes.
 
  @author J. Alex Taylor, hairyfatguy.com
 
 */
//------------------------------------------------------------------------------
// com.hfg XML/HTML Coding Library
//
// This library is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License as published by the Free Software Foundation; either
// version 2.1 of the License, or (at your option) any later version.
//
// This library is distributed in the hope that it will be useful,
// but WITHOUT ANY WARRANTY; without even the implied warranty of
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
// Lesser General Public License for more details.
//
// You should have received a copy of the GNU Lesser General Public
// License along with this library; if not, write to the Free Software
// Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA
//
// J. Alex Taylor, President, Founder, CEO, COO, CFO, OOPS hairyfatguy.com
// [email protected]
//------------------------------------------------------------------------------

public abstract class ProteinAnalysisMode
{
   private String mName;

   public static final NativeAnalysisMode    NATIVE    = NativeAnalysisMode.getInstance();
   public static final ReducedAnalysisMode   REDUCED   = new ReducedAnalysisMode();

   //--------------------------------------------------------------------------
   protected ProteinAnalysisMode(String inName)
   {
      mName = inName;
   }


   //---------------------------------------------------------------------------
   public String name()
   {
      return mName;
   }

   //--------------------------------------------------------------------------
   public XMLTag toXMLTag()
   {
      XMLTag tag = new XMLTag(HfgBioXML.PROTEIN_ANALYSIS_MODE_TAG);
      tag.setAttribute("class", this.getClass().getName());

      return tag;
   }

   //--------------------------------------------------------------------------
   public static ProteinAnalysisMode instantiate(XMLTag inXMLNode)
   {
      String classname = inXMLNode.getAttributeValue(HfgBioXML.CLASS_ATT);
      if (! StringUtil.isSet(classname))
      {
         throw new RuntimeException("No " + HfgBioXML.CLASS_ATT + " specified on sequence's XML tag!");
      }

      ProteinAnalysisMode value = null;
      if (classname.equals(NATIVE.getClass().getName()))
      {
         value = NATIVE;
      }
      else
      {
         value = new ReducedAnalysisMode(inXMLNode);
      }

      return value;
   }
}