com.hfg.bio.seq.alignment.muscle.MuscleOutput Maven / Gradle / Ivy

Go to download
Show more of this group Show more artifacts with this name
Show all versions of com_hfg Show documentation
com.hfg xml, html, svg, and bioinformatics utility library
There is a newer version: 20240423
package com.hfg.bio.seq.alignment.muscle;

//==============================================================================
/**
 Output from Muscle multiple sequence alignment execution.

 @author J. Alex Taylor, hairyfatguy.com
 */
//==============================================================================
// com.hfg XML/HTML Coding Library
//
// This library is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License as published by the Free Software Foundation; either
// version 2.1 of the License, or (at your option) any later version.
//
// This library is distributed in the hope that it will be useful,
// but WITHOUT ANY WARRANTY; without even the implied warranty of
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
// Lesser General Public License for more details.
//
// You should have received a copy of the GNU Lesser General Public
// License along with this library; if not, write to the Free Software
// Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA
//
// J. Alex Taylor, President, Founder, CEO, COO, CFO, OOPS hairyfatguy.com
// [email protected]
//==============================================================================
// http://www.drive5.com/muscle

public class MuscleOutput
{
   private Integer mExitStatus;
   private String  mStdErr;
   private String  mStdOut;
   private String  mExecutedCmd;
   private String  mMuscleVersion;

   //###########################################################################
   // PUBLIC METHODS
   //###########################################################################

   //---------------------------------------------------------------------------
   public MuscleOutput setExitStatus(Integer inValue)
   {
      mExitStatus = inValue;
      return this;
   }

   //---------------------------------------------------------------------------
   public Integer getExitStatus()
   {
      return mExitStatus;
   }


   //---------------------------------------------------------------------------
   public MuscleOutput setStdErr(String inValue)
   {
      mStdErr = inValue;
      return this;
   }

   //---------------------------------------------------------------------------
   public String getStdErr()
   {
      return mStdErr;
   }


   //---------------------------------------------------------------------------
   public MuscleOutput setStdOut(String inValue)
   {
      mStdOut = inValue;
      return this;
   }

   //---------------------------------------------------------------------------
   public String getStdOut()
   {
      return mStdOut;
   }


   //---------------------------------------------------------------------------
   public MuscleOutput setExecutedCmd(String inValue)
   {
      mExecutedCmd = inValue;
      return this;
   }

   //---------------------------------------------------------------------------
   public String getExecutedCmd()
   {
      return mExecutedCmd;
   }


   //---------------------------------------------------------------------------
   public MuscleOutput setMuscleVersion(String inValue)
   {
      mMuscleVersion = inValue;
      return this;
   }

   //---------------------------------------------------------------------------
   public String getMuscleVersion()
   {
      return mMuscleVersion;
   }

}