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HermiT is reasoner for ontologies written using the Web
Ontology Language (OWL). Given an OWL file, HermiT can determine whether or
not the ontology is consistent, identify subsumption relationships between
classes, and much more.
This is the maven build of HermiT and is designed for people who wish to use
HermiT from within the OWL API. It is now versioned in the main HermiT
version repository, although not officially supported by the HermiT
developers.
The version number of this package is a composite of the HermiT version and
an value representing releases of this packaged version. So, 1.3.7.1 is the
first release of the mavenized version of HermiT based on the 1.3.7 release
of HermiT.
This package includes the Jautomata library
(http://jautomata.sourceforge.net/), and builds with it directly. This
library appears to be no longer under active development, and so a "fork"
seems appropriate. No development is intended or anticipated on this code
base.
/* Copyright 2008, 2009, 2010 by the Oxford University Computing Laboratory
This file is part of HermiT.
HermiT is free software: you can redistribute it and/or modify
it under the terms of the GNU Lesser General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
HermiT is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public License
along with HermiT. If not, see .
*/
package org.semanticweb.HermiT.blocking;
import java.io.Serializable;
import java.util.ArrayList;
import java.util.List;
import java.util.Set;
import org.semanticweb.HermiT.model.AtomicConcept;
import org.semanticweb.HermiT.model.AtomicRole;
import org.semanticweb.HermiT.model.Concept;
import org.semanticweb.HermiT.model.DataRange;
import org.semanticweb.HermiT.tableau.ExtensionTable;
import org.semanticweb.HermiT.tableau.Node;
import org.semanticweb.HermiT.tableau.NodeType;
import org.semanticweb.HermiT.tableau.Tableau;
public class PairWiseDirectBlockingChecker implements DirectBlockingChecker,Serializable {
private static final long serialVersionUID=-8296420442452625109L;
protected final SetFactory m_atomicConceptsSetFactory;
protected final SetFactory m_atomicRolesSetFactory;
protected final List m_atomicConceptsBuffer;
protected final List m_atomicRolesBuffer;
protected Tableau m_tableau;
protected ExtensionTable.Retrieval m_binaryTableSearch1Bound;
protected ExtensionTable.Retrieval m_ternaryTableSearch12Bound;
public PairWiseDirectBlockingChecker() {
m_atomicConceptsSetFactory=new SetFactory();
m_atomicRolesSetFactory=new SetFactory();
m_atomicConceptsBuffer=new ArrayList();
m_atomicRolesBuffer=new ArrayList();
}
public void initialize(Tableau tableau) {
m_tableau=tableau;
m_binaryTableSearch1Bound=tableau.getExtensionManager().getBinaryExtensionTable().createRetrieval(new boolean[] { false,true },ExtensionTable.View.TOTAL);
m_ternaryTableSearch12Bound=tableau.getExtensionManager().getTernaryExtensionTable().createRetrieval(new boolean[] { false,true,true },ExtensionTable.View.TOTAL);
}
public void clear() {
m_atomicConceptsSetFactory.clearNonpermanent();
m_atomicRolesSetFactory.clearNonpermanent();
m_binaryTableSearch1Bound.clear();
m_ternaryTableSearch12Bound.clear();
}
public boolean isBlockedBy(Node blocker,Node blocked) {
PairWiseBlockingObject blockerObject=(PairWiseBlockingObject)blocker.getBlockingObject();
PairWiseBlockingObject blockedObject=(PairWiseBlockingObject)blocked.getBlockingObject();
return
!blocker.isBlocked() &&
blocker.getNodeType()==NodeType.TREE_NODE &&
blocked.getNodeType()==NodeType.TREE_NODE &&
blockerObject.getAtomicConceptsLabel()==blockedObject.getAtomicConceptsLabel() &&
((PairWiseBlockingObject)blocker.getParent().getBlockingObject()).getAtomicConceptsLabel()==((PairWiseBlockingObject)blocked.getParent().getBlockingObject()).getAtomicConceptsLabel() &&
blockerObject.getFromParentLabel()==blockedObject.getFromParentLabel() &&
blockerObject.getToParentLabel()==blockedObject.getToParentLabel();
}
public int blockingHashCode(Node node) {
PairWiseBlockingObject nodeObject=(PairWiseBlockingObject)node.getBlockingObject();
return
nodeObject.m_atomicConceptsLabelHashCode+
((PairWiseBlockingObject)node.getParent().getBlockingObject()).m_atomicConceptsLabelHashCode+
nodeObject.m_fromParentLabelHashCode+
nodeObject.m_toParentLabelHashCode;
}
public boolean canBeBlocker(Node node) {
Node parent=node.getParent();
return node.getNodeType()==NodeType.TREE_NODE && (parent.getNodeType()==NodeType.TREE_NODE || parent.getNodeType()==NodeType.GRAPH_NODE);
}
public boolean canBeBlocked(Node node) {
Node parent=node.getParent();
return node.getNodeType()==NodeType.TREE_NODE && (parent.getNodeType()==NodeType.TREE_NODE || parent.getNodeType()==NodeType.GRAPH_NODE);
}
public boolean hasBlockingInfoChanged(Node node) {
return ((PairWiseBlockingObject)node.getBlockingObject()).m_hasChanged;
}
public void clearBlockingInfoChanged(Node node) {
((PairWiseBlockingObject)node.getBlockingObject()).m_hasChanged=false;
}
public void nodeInitialized(Node node) {
if (node.getBlockingObject()==null)
node.setBlockingObject(new PairWiseBlockingObject(node));
((PairWiseBlockingObject)node.getBlockingObject()).initialize();
}
public void nodeDestroyed(Node node) {
((PairWiseBlockingObject)node.getBlockingObject()).destroy();
}
public Node assertionAdded(Concept concept,Node node,boolean isCore) {
if (concept instanceof AtomicConcept) {
((PairWiseBlockingObject)node.getBlockingObject()).addAtomicConcept((AtomicConcept)concept);
return node;
}
else
return null;
}
public Node assertionRemoved(Concept concept,Node node,boolean isCore) {
if (concept instanceof AtomicConcept) {
((PairWiseBlockingObject)node.getBlockingObject()).removeAtomicConcept((AtomicConcept)concept);
return node;
}
else
return null;
}
public Node assertionAdded(DataRange range,Node node,boolean isCore) {
return null;
}
public Node assertionRemoved(DataRange range,Node node,boolean isCore) {
return null;
}
public Node assertionAdded(AtomicRole atomicRole,Node nodeFrom,Node nodeTo,boolean isCore) {
if (nodeFrom.isParentOf(nodeTo)) {
((PairWiseBlockingObject)nodeTo.getBlockingObject()).addToFromParentLabel(atomicRole);
return nodeTo;
}
else if (nodeTo.isParentOf(nodeFrom)) {
((PairWiseBlockingObject)nodeFrom.getBlockingObject()).addToToParentLabel(atomicRole);
return nodeFrom;
}
else {
// If the previous two tests fail, then the added assertion represents a relation between
// root nodes or a back-link to the root node. Such assertions are not relevant for blocking;
// hence, neither node should be marked as changed.
return null;
}
}
public Node assertionRemoved(AtomicRole atomicRole,Node nodeFrom,Node nodeTo,boolean isCore) {
if (nodeFrom.isParentOf(nodeTo)) {
((PairWiseBlockingObject)nodeTo.getBlockingObject()).removeFromFromParentLabel(atomicRole);
return nodeTo;
}
else if (nodeTo.isParentOf(nodeFrom)) {
((PairWiseBlockingObject)nodeFrom.getBlockingObject()).removeFromToParentLabel(atomicRole);
return nodeFrom;
}
else {
// If the previous two tests fail, then the removed assertion represents a relation between
// root nodes or a back-link to the root node. Such assertions are not relevant for blocking;
// hence, neither node should be marked as changed.
return null;
}
}
public Node nodesMerged(Node mergeFrom,Node mergeInto) {
return null;
}
public Node nodesUnmerged(Node mergeFrom,Node mergeInto) {
return null;
}
public BlockingSignature getBlockingSignatureFor(Node node) {
return new PairWiseBlockingSignature(this,node);
}
protected Set fetchAtomicConceptsLabel(Node node) {
m_atomicConceptsBuffer.clear();
m_binaryTableSearch1Bound.getBindingsBuffer()[1]=node;
m_binaryTableSearch1Bound.open();
Object[] tupleBuffer=m_binaryTableSearch1Bound.getTupleBuffer();
while (!m_binaryTableSearch1Bound.afterLast()) {
Object concept=tupleBuffer[0];
if (concept instanceof AtomicConcept)
m_atomicConceptsBuffer.add((AtomicConcept)concept);
m_binaryTableSearch1Bound.next();
}
Set result=m_atomicConceptsSetFactory.getSet(m_atomicConceptsBuffer);
m_atomicConceptsBuffer.clear();
return result;
}
public Set fetchEdgeLabel(Node nodeFrom,Node nodeTo) {
m_atomicRolesBuffer.clear();
m_ternaryTableSearch12Bound.getBindingsBuffer()[1]=nodeFrom;
m_ternaryTableSearch12Bound.getBindingsBuffer()[2]=nodeTo;
m_ternaryTableSearch12Bound.open();
Object[] tupleBuffer=m_ternaryTableSearch12Bound.getTupleBuffer();
while (!m_ternaryTableSearch12Bound.afterLast()) {
Object atomicRole=tupleBuffer[0];
if (atomicRole instanceof AtomicRole)
m_atomicRolesBuffer.add((AtomicRole)atomicRole);
m_ternaryTableSearch12Bound.next();
}
Set result=m_atomicRolesSetFactory.getSet(m_atomicRolesBuffer);
m_atomicRolesBuffer.clear();
return result;
}
public boolean hasChangedSinceValidation(Node node) {
return false;
}
public void setHasChangedSinceValidation(Node node,boolean hasChanged) {
// do nothing
}
protected final class PairWiseBlockingObject implements Serializable {
private static final long serialVersionUID=-5439737072100509531L;
protected final Node m_node;
protected boolean m_hasChanged;
protected Set m_atomicConceptsLabel;
protected int m_atomicConceptsLabelHashCode;
protected Set m_fromParentLabel;
protected int m_fromParentLabelHashCode;
protected Set m_toParentLabel;
protected int m_toParentLabelHashCode;
public PairWiseBlockingObject(Node node) {
m_node=node;
}
public void initialize() {
m_atomicConceptsLabel=null;
m_atomicConceptsLabelHashCode=0;
m_fromParentLabel=null;
m_fromParentLabelHashCode=0;
m_toParentLabel=null;
m_toParentLabelHashCode=0;
m_hasChanged=true;
}
public void destroy() {
if (m_atomicConceptsLabel!=null) {
m_atomicConceptsSetFactory.removeReference(m_atomicConceptsLabel);
m_atomicConceptsLabel=null;
}
if (m_fromParentLabel!=null) {
m_atomicRolesSetFactory.removeReference(m_fromParentLabel);
m_fromParentLabel=null;
}
if (m_toParentLabel!=null) {
m_atomicRolesSetFactory.removeReference(m_toParentLabel);
m_toParentLabel=null;
}
}
public Set getAtomicConceptsLabel() {
if (m_atomicConceptsLabel==null) {
m_atomicConceptsLabel=PairWiseDirectBlockingChecker.this.fetchAtomicConceptsLabel(m_node);
m_atomicConceptsSetFactory.addReference(m_atomicConceptsLabel);
}
return m_atomicConceptsLabel;
}
public void addAtomicConcept(AtomicConcept atomicConcept) {
if (m_atomicConceptsLabel!=null) {
m_atomicConceptsSetFactory.removeReference(m_atomicConceptsLabel);
m_atomicConceptsLabel=null;
}
m_atomicConceptsLabelHashCode+=atomicConcept.hashCode();
m_hasChanged=true;
}
public void removeAtomicConcept(AtomicConcept atomicConcept) {
if (m_atomicConceptsLabel!=null) {
m_atomicConceptsSetFactory.removeReference(m_atomicConceptsLabel);
m_atomicConceptsLabel=null;
}
m_atomicConceptsLabelHashCode-=atomicConcept.hashCode();
m_hasChanged=true;
}
public Set getFromParentLabel() {
if (m_fromParentLabel==null) {
m_fromParentLabel=fetchEdgeLabel(m_node.getParent(),m_node);
m_atomicRolesSetFactory.addReference(m_fromParentLabel);
}
return m_fromParentLabel;
}
protected void addToFromParentLabel(AtomicRole atomicRole) {
if (m_fromParentLabel!=null) {
m_atomicRolesSetFactory.removeReference(m_fromParentLabel);
m_fromParentLabel=null;
}
m_fromParentLabelHashCode+=atomicRole.hashCode();
m_hasChanged=true;
}
protected void removeFromFromParentLabel(AtomicRole atomicRole) {
if (m_fromParentLabel!=null) {
m_atomicRolesSetFactory.removeReference(m_fromParentLabel);
m_fromParentLabel=null;
}
m_fromParentLabelHashCode-=atomicRole.hashCode();
m_hasChanged=true;
}
public Set getToParentLabel() {
if (m_toParentLabel==null) {
m_toParentLabel=fetchEdgeLabel(m_node,m_node.getParent());
m_atomicRolesSetFactory.addReference(m_toParentLabel);
}
return m_toParentLabel;
}
protected void addToToParentLabel(AtomicRole atomicRole) {
if (m_toParentLabel!=null) {
m_atomicRolesSetFactory.removeReference(m_toParentLabel);
m_toParentLabel=null;
}
m_toParentLabelHashCode+=atomicRole.hashCode();
m_hasChanged=true;
}
protected void removeFromToParentLabel(AtomicRole atomicRole) {
if (m_toParentLabel!=null) {
m_atomicRolesSetFactory.removeReference(m_toParentLabel);
m_toParentLabel=null;
}
m_toParentLabelHashCode-=atomicRole.hashCode();
m_hasChanged=true;
}
}
protected static class PairWiseBlockingSignature extends BlockingSignature implements Serializable {
private static final long serialVersionUID=4697990424058632618L;
protected final Set m_atomicConceptLabel;
protected final Set m_parentAtomicConceptLabel;
protected final Set m_fromParentLabel;
protected final Set m_toParentLabel;
protected final int m_hashCode;
public PairWiseBlockingSignature(PairWiseDirectBlockingChecker checker,Node node) {
PairWiseBlockingObject nodeBlockingObject=(PairWiseBlockingObject)node.getBlockingObject();
m_atomicConceptLabel=nodeBlockingObject.getAtomicConceptsLabel();
m_parentAtomicConceptLabel=((PairWiseBlockingObject)node.getParent().getBlockingObject()).getAtomicConceptsLabel();
m_fromParentLabel=nodeBlockingObject.getFromParentLabel();
m_toParentLabel=nodeBlockingObject.getToParentLabel();
m_hashCode=
m_atomicConceptLabel.hashCode()+
m_parentAtomicConceptLabel.hashCode()+
m_fromParentLabel.hashCode()+
m_toParentLabel.hashCode();
checker.m_atomicConceptsSetFactory.makePermanent(m_atomicConceptLabel);
checker.m_atomicConceptsSetFactory.makePermanent(m_parentAtomicConceptLabel);
checker.m_atomicRolesSetFactory.makePermanent(m_fromParentLabel);
checker.m_atomicRolesSetFactory.makePermanent(m_toParentLabel);
}
public boolean blocksNode(Node node) {
PairWiseBlockingObject nodeBlockingObject=(PairWiseBlockingObject)node.getBlockingObject();
return
nodeBlockingObject.getAtomicConceptsLabel()==m_atomicConceptLabel &&
((PairWiseBlockingObject)node.getParent().getBlockingObject()).getAtomicConceptsLabel()==m_parentAtomicConceptLabel &&
nodeBlockingObject.getFromParentLabel()==m_fromParentLabel &&
nodeBlockingObject.getToParentLabel()==m_toParentLabel;
}
public int hashCode() {
return m_hashCode;
}
public boolean equals(Object that) {
if (this==that)
return true;
if (!(that instanceof PairWiseBlockingSignature))
return false;
PairWiseBlockingSignature thatSignature=(PairWiseBlockingSignature)that;
return
m_atomicConceptLabel==thatSignature.m_atomicConceptLabel &&
m_parentAtomicConceptLabel==thatSignature.m_parentAtomicConceptLabel &&
m_fromParentLabel==thatSignature.m_fromParentLabel &&
m_toParentLabel==thatSignature.m_toParentLabel;
}
}
}
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