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HermiT is reasoner for ontologies written using the Web
Ontology Language (OWL). Given an OWL file, HermiT can determine whether or
not the ontology is consistent, identify subsumption relationships between
classes, and much more.
This is the maven build of HermiT and is designed for people who wish to use
HermiT from within the OWL API. It is now versioned in the main HermiT
version repository, although not officially supported by the HermiT
developers.
The version number of this package is a composite of the HermiT version and
an value representing releases of this packaged version. So, 1.3.7.1 is the
first release of the mavenized version of HermiT based on the 1.3.7 release
of HermiT.
This package includes the Jautomata library
(http://jautomata.sourceforge.net/), and builds with it directly. This
library appears to be no longer under active development, and so a "fork"
seems appropriate. No development is intended or anticipated on this code
base.
/* Copyright 2008, 2009, 2010 by the Oxford University Computing Laboratory
This file is part of HermiT.
HermiT is free software: you can redistribute it and/or modify
it under the terms of the GNU Lesser General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
HermiT is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public License
along with HermiT. If not, see .
*/
package org.semanticweb.HermiT.blocking;
import java.io.Serializable;
import java.util.Collection;
import java.util.Iterator;
import java.util.List;
import java.util.NoSuchElementException;
import java.util.Set;
/**
* This class is used to create sets of various types. It ensures that each distinct set exists only once,
* thus allowing sets to be compared with ==. Instances of this class are used to create various labels in blocking.
*/
@SuppressWarnings({ "unchecked", "rawtypes"})
public class SetFactory implements Serializable {
private static final long serialVersionUID=7071071962187693657L;
protected Entry[] m_unusedEntries;
protected Entry[] m_entries;
protected int m_size;
protected int m_resizeThreshold;
public SetFactory() {
m_unusedEntries=new Entry[32];
m_entries=new Entry[16];
m_size=0;
m_resizeThreshold=(int)(0.75*m_entries.length);
}
public void clearNonpermanent() {
for (int i=m_entries.length-1;i>=0;--i) {
Entry entry=m_entries[i];
while (entry!=null) {
Entry nextEntry=entry.m_nextEntry;
if (!entry.m_permanent) {
removeEntry(entry);
leaveEntry(entry);
}
entry=nextEntry;
}
}
}
public int sizeInMemory() {
int size=m_unusedEntries.length*4+m_entries.length*4;
for (int i=m_unusedEntries.length-1;i>=0;--i) {
Entry entry=m_unusedEntries[i];
while (entry!=null) {
size+=entry.m_table.length*4+6*4;
entry=entry.m_nextEntry;
}
}
for (int i=m_entries.length-1;i>=0;--i) {
Entry entry=m_entries[i];
while (entry!=null) {
size+=entry.m_table.length*4+6*4;
entry=entry.m_nextEntry;
}
}
return size;
}
public void addReference(Set set) {
((Entry)set).m_referenceCount++;
}
public void removeReference(Set set) {
Entry entry=(Entry)set;
entry.m_referenceCount--;
if (entry.m_referenceCount==0 && !entry.m_permanent) {
removeEntry(entry);
leaveEntry(entry);
}
}
public void makePermanent(Set set) {
((Entry)set).m_permanent=true;
}
public Set getSet(List elements) {
int hashCode=0;
for (int index=elements.size()-1;index>=0;--index)
hashCode+=elements.get(index).hashCode();
int index=getIndexFor(hashCode,m_entries.length);
Entry entry=m_entries[index];
while (entry!=null) {
if (hashCode==entry.m_hashCode && entry.equalsTo(elements))
return entry;
entry=entry.m_nextEntry;
}
entry=getEntry(elements.size());
entry.initialize(elements,hashCode);
entry.m_previousEntry=null;
entry.m_nextEntry=m_entries[index];
if (entry.m_nextEntry!=null)
entry.m_nextEntry.m_previousEntry=entry;
m_entries[index]=entry;
m_size++;
if (m_size>m_resizeThreshold)
resize();
return entry;
}
protected void resize() {
Entry[] newEntries=new Entry[m_entries.length*2];
for (int index=0;index entry) {
if (entry.m_nextEntry!=null)
entry.m_nextEntry.m_previousEntry=entry.m_previousEntry;
if (entry.m_previousEntry!=null)
entry.m_previousEntry.m_nextEntry=entry.m_nextEntry;
int index=getIndexFor(entry.m_hashCode,m_entries.length);
if (m_entries[index]==entry)
m_entries[index]=entry.m_nextEntry;
entry.m_nextEntry=null;
entry.m_previousEntry=null;
}
protected Entry getEntry(int size) {
if (size>=m_unusedEntries.length) {
int newSize=m_unusedEntries.length;
while (newSize<=size)
newSize=newSize*3/2;
Entry[] newUnusedEntries=new Entry[newSize];
System.arraycopy(m_unusedEntries,0,newUnusedEntries,0,m_unusedEntries.length);
m_unusedEntries=newUnusedEntries;
}
Entry entry=m_unusedEntries[size];
if (entry==null)
return new Entry(size);
else {
m_unusedEntries[size]=entry.m_nextEntry;
entry.m_nextEntry=null;
return entry;
}
}
protected void leaveEntry(Entry entry) {
entry.m_nextEntry=m_unusedEntries[entry.size()];
entry.m_previousEntry=null;
m_unusedEntries[entry.size()]=entry;
}
protected static int getIndexFor(int hashCode,int tableLength) {
return hashCode & (tableLength-1);
}
protected static class Entry implements Serializable,Set {
private static final long serialVersionUID=-3850593656120645350L;
protected T[] m_table;
protected int m_hashCode;
protected Entry m_previousEntry;
protected Entry m_nextEntry;
protected int m_referenceCount;
protected boolean m_permanent;
public Entry(int size) {
m_hashCode=0;
m_table=(T[])new Object[size];
}
public void initialize(List elements,int hashCode) {
elements.toArray(m_table);
m_hashCode=hashCode;
}
public void clear() {
throw new UnsupportedOperationException();
}
public boolean add(T object) {
throw new UnsupportedOperationException();
}
public boolean equalsTo(List elements) {
if (m_table.length!=elements.size())
return false;
for (int index=m_table.length-1;index>=0;--index)
if (!elements.contains(m_table[index]))
return false;
return true;
}
public boolean addAll(Collection extends T> c) {
throw new UnsupportedOperationException();
}
public boolean contains(Object o) {
for (int index=m_table.length-1;index>=0;--index)
if (m_table[index].equals(o))
return true;
return false;
}
public boolean containsAll(Collection> c) {
for (Object object : c)
if (!contains(object))
return false;
return true;
}
public boolean isEmpty() {
return m_table.length==0;
}
public Iterator iterator() {
return new EntryIterator();
}
public boolean remove(Object o) {
throw new UnsupportedOperationException();
}
public boolean removeAll(Collection> c) {
throw new UnsupportedOperationException();
}
public boolean retainAll(Collection> c) {
throw new UnsupportedOperationException();
}
public int size() {
return m_table.length;
}
public Object[] toArray() {
return m_table.clone();
}
public E[] toArray(E[] a) {
System.arraycopy(m_table,0,a,0,m_table.length);
return a;
}
public int hashCode() {
return m_hashCode;
}
public boolean equals(Object that) {
return this==that;
}
protected class EntryIterator implements Iterator {
protected int m_currentIndex;
public EntryIterator() {
m_currentIndex=0;
}
public boolean hasNext() {
return m_currentIndex=m_table.length)
throw new NoSuchElementException();
return m_table[m_currentIndex++];
}
public void remove() {
throw new UnsupportedOperationException();
}
}
}
}
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