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HermiT is reasoner for ontologies written using the Web Ontology Language (OWL). Given an OWL file, HermiT can determine whether or not the ontology is consistent, identify subsumption relationships between classes, and much more. This is the maven build of HermiT and is designed for people who wish to use HermiT from within the OWL API. It is now versioned in the main HermiT version repository, although not officially supported by the HermiT developers. The version number of this package is a composite of the HermiT version and an value representing releases of this packaged version. So, 1.3.7.1 is the first release of the mavenized version of HermiT based on the 1.3.7 release of HermiT. This package includes the Jautomata library (http://jautomata.sourceforge.net/), and builds with it directly. This library appears to be no longer under active development, and so a "fork" seems appropriate. No development is intended or anticipated on this code base.

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/* Copyright 2008, 2009, 2010 by the Oxford University Computing Laboratory

   This file is part of HermiT.

   HermiT is free software: you can redistribute it and/or modify
   it under the terms of the GNU Lesser General Public License as published by
   the Free Software Foundation, either version 3 of the License, or
   (at your option) any later version.

   HermiT is distributed in the hope that it will be useful,
   but WITHOUT ANY WARRANTY; without even the implied warranty of
   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
   GNU Lesser General Public License for more details.

   You should have received a copy of the GNU Lesser General Public License
   along with HermiT.  If not, see .
*/
package org.semanticweb.HermiT.tableau;

import java.io.Serializable;

import org.semanticweb.HermiT.model.AtomicConcept;
import org.semanticweb.HermiT.model.AtomicRole;
import org.semanticweb.HermiT.model.Concept;
import org.semanticweb.HermiT.model.InternalDatatype;

/**
 * This extension table is for use with Description Graphs and it supports tuple
 * tables with arity greater than three, but are, as a result, less efficient.
 * @see ExtensionTableWithTupleIndexes
 */
public class ExtensionTableWithFullIndex extends ExtensionTable {
    private static final long serialVersionUID=2856811178050960058L;

    protected final TupleTableFullIndex m_tupleTableFullIndex;
    protected final Object[] m_auxiliaryTuple;

    public ExtensionTableWithFullIndex(Tableau tableau,int tupleArity,boolean needsDependencySets) {
        super(tableau,tupleArity,needsDependencySets);
        m_tupleTableFullIndex=new TupleTableFullIndex(m_tupleTable,m_tupleArity);
        m_auxiliaryTuple=new Object[m_tupleArity];
    }
    public int sizeInMemory() {
        return m_tupleTable.sizeInMemory()+m_tupleTableFullIndex.sizeInMemory();
    }
    public boolean addTuple(Object[] tuple,DependencySet dependencySet,boolean isCore) {
        if (m_tableauMonitor!=null)
            m_tableauMonitor.addFactStarted(tuple,isCore);
        if (isTupleActive(tuple) && (m_tableau.m_needsThingExtension || !AtomicConcept.THING.equals(tuple[0])) && (m_tableau.m_needsRDFSLiteralExtension || !InternalDatatype.RDFS_LITERAL.equals(tuple[0]))) {
            int firstFreeTupleIndex=m_tupleTable.getFirstFreeTupleIndex();
            int addTupleIndex=m_tupleTableFullIndex.addTuple(tuple,firstFreeTupleIndex);
            if (addTupleIndex==firstFreeTupleIndex) {
                m_tupleTable.addTuple(tuple);
                m_dependencySetManager.setDependencySet(addTupleIndex,dependencySet);
                m_coreManager.setCore(addTupleIndex,isCore);
                m_afterDeltaNewTupleIndex=m_tupleTable.getFirstFreeTupleIndex();
                if (m_tableauMonitor!=null)
                    m_tableauMonitor.addFactFinished(tuple,isCore,true);
                postAdd(tuple,dependencySet,addTupleIndex,isCore);
                return true;
            }
            if (isCore && !m_coreManager.isCore(addTupleIndex)) {
                m_coreManager.addCore(addTupleIndex);
                Object dlPredicateObject=tuple[0];
                if (dlPredicateObject instanceof Concept)
                    m_tableau.m_existentialExpansionStrategy.assertionCoreSet((Concept)dlPredicateObject,(Node)tuple[1]);
                else if (dlPredicateObject instanceof AtomicRole)
                    m_tableau.m_existentialExpansionStrategy.assertionCoreSet((AtomicRole)dlPredicateObject,(Node)tuple[1],(Node)tuple[2]);
            }
        }
        if (m_tableauMonitor!=null)
            m_tableauMonitor.addFactFinished(tuple,isCore,false);
        return false;
    }
    public boolean containsTuple(Object[] tuple) {
        int tupleIndex=m_tupleTableFullIndex.getTupleIndex(tuple);
        return tupleIndex!=-1 && isTupleActive(tupleIndex);
    }
    public DependencySet getDependencySet(Object[] tuple) {
        int tupleIndex=m_tupleTableFullIndex.getTupleIndex(tuple);
        if (tupleIndex==-1)
            return null;
        else
            return m_dependencySetManager.getDependencySet(tupleIndex);
    }
    public boolean isCore(Object[] tuple) {
        int tupleIndex=m_tupleTableFullIndex.getTupleIndex(tuple);
        if (tupleIndex==-1)
            return false;
        else
            return m_coreManager.isCore(tupleIndex);
    }
    public Retrieval createRetrieval(int[] bindingPositions,Object[] bindingsBuffer,Object[] tupleBuffer,boolean ownsBuffers,View extensionView) {
        int numberOfBindings=0;
        for (int index=m_tupleArity-1;index>=0;--index)
            if (bindingPositions[index]!=-1)
                numberOfBindings++;
        if (numberOfBindings==m_tupleArity)
            return new IndexedRetrieval(bindingPositions,bindingsBuffer,tupleBuffer,ownsBuffers,extensionView);
        else
            return new UnindexedRetrieval(bindingPositions,bindingsBuffer,tupleBuffer,ownsBuffers,extensionView);
    }
    protected void removeTuple(int tupleIndex) {
        m_tupleTableFullIndex.removeTuple(tupleIndex);
        m_tupleTable.retrieveTuple(m_auxiliaryTuple,tupleIndex);
        postRemove(m_auxiliaryTuple,tupleIndex);
    }
    public void clear() {
        super.clear();
        m_tupleTableFullIndex.clear();
    }

    protected class IndexedRetrieval implements Retrieval,Serializable {
        private static final long serialVersionUID=5984560476970027366L;

        protected final int[] m_bindingPositions;
        protected final Object[] m_bindingsBuffer;
        protected final Object[] m_tupleBuffer;
        protected final boolean m_ownsBuffers;
        protected final ExtensionTable.View m_extensionView;
        protected int m_currentTupleIndex;

        public IndexedRetrieval(int[] bindingPositions,Object[] bindingsBuffer,Object[] tupleBuffer,boolean ownsBuffers,View extensionView) {
            m_bindingPositions=bindingPositions;
            m_bindingsBuffer=bindingsBuffer;
            m_tupleBuffer=tupleBuffer;
            m_ownsBuffers=ownsBuffers;
            m_extensionView=extensionView;
        }
        public ExtensionTable getExtensionTable() {
            return ExtensionTableWithFullIndex.this;
        }
        public ExtensionTable.View getExtensionView() {
            return m_extensionView;
        }
        public void clear() {
            if (m_ownsBuffers) {
                for (int index=m_bindingsBuffer.length-1;index>=0;--index)
                    m_bindingsBuffer[index]=null;
                for (int index=m_tupleBuffer.length-1;index>=0;--index)
                    m_tupleBuffer[index]=null;
            }
        }
        public int[] getBindingPositions() {
            return m_bindingPositions;
        }
        public Object[] getBindingsBuffer() {
            return m_bindingsBuffer;
        }
        public Object[] getTupleBuffer() {
            return m_tupleBuffer;
        }
        public DependencySet getDependencySet() {
            if (m_currentTupleIndex==-1)
                return null;
            else
                return m_dependencySetManager.getDependencySet(m_currentTupleIndex);
        }
        public boolean isCore() {
            if (m_currentTupleIndex==-1)
                return false;
            else
                return m_coreManager.isCore(m_currentTupleIndex);
        }
        public void open() {
            m_currentTupleIndex=m_tupleTableFullIndex.getTupleIndex(m_bindingsBuffer,m_bindingPositions);
            switch (m_extensionView) {
            case EXTENSION_THIS:
                if (!(0<=m_currentTupleIndex && m_currentTupleIndex




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