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HermiT is reasoner for ontologies written using the Web
Ontology Language (OWL). Given an OWL file, HermiT can determine whether or
not the ontology is consistent, identify subsumption relationships between
classes, and much more.
This is the maven build of HermiT and is designed for people who wish to use
HermiT from within the OWL API. It is now versioned in the main HermiT
version repository, although not officially supported by the HermiT
developers.
The version number of this package is a composite of the HermiT version and
an value representing releases of this packaged version. So, 1.3.7.1 is the
first release of the mavenized version of HermiT based on the 1.3.7 release
of HermiT.
This package includes the Jautomata library
(http://jautomata.sourceforge.net/), and builds with it directly. This
library appears to be no longer under active development, and so a "fork"
seems appropriate. No development is intended or anticipated on this code
base.
/* Copyright 2008, 2009, 2010 by the Oxford University Computing Laboratory
This file is part of HermiT.
HermiT is free software: you can redistribute it and/or modify
it under the terms of the GNU Lesser General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
HermiT is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public License
along with HermiT. If not, see .
*/
package org.semanticweb.HermiT.tableau;
import java.io.Serializable;
import org.semanticweb.HermiT.model.AtomicConcept;
import org.semanticweb.HermiT.model.AtomicRole;
import org.semanticweb.HermiT.model.Concept;
import org.semanticweb.HermiT.model.InternalDatatype;
/**
* This extension table is for use with binary and ternary assertions (not
* description graphs).
* @see ExtensionTableWithFullIndex
*/
public class ExtensionTableWithTupleIndexes extends ExtensionTable {
private static final long serialVersionUID=-684536236157965372L;
protected final TupleIndex[] m_tupleIndexes;
protected final Object[] m_auxiliaryTuple;
public ExtensionTableWithTupleIndexes(Tableau tableau,int tupleArity,boolean needsDependencySets,TupleIndex[] tupleIndexes) {
super(tableau,tupleArity,needsDependencySets);
m_tupleIndexes=tupleIndexes;
m_auxiliaryTuple=new Object[m_tupleArity];
}
public int sizeInMemory() {
int size=m_tupleTable.sizeInMemory();
for (int i=m_tupleIndexes.length-1;i>=0;--i)
size+=m_tupleIndexes[i].sizeInMemoy();
return size;
}
public boolean addTuple(Object[] tuple,DependencySet dependencySet,boolean isCore) {
if (m_tableauMonitor!=null)
m_tableauMonitor.addFactStarted(tuple,isCore);
if (isTupleActive(tuple) && (m_tableau.m_needsThingExtension || !AtomicConcept.THING.equals(tuple[0])) && (m_tableau.m_needsRDFSLiteralExtension || !InternalDatatype.RDFS_LITERAL.equals(tuple[0]))) {
int firstFreeTupleIndex=m_tupleTable.getFirstFreeTupleIndex();
int addTupleIndex=m_tupleIndexes[0].addTuple(tuple,firstFreeTupleIndex);
if (addTupleIndex==firstFreeTupleIndex) {
for (int index=1;index=0;--index) {
int[] indexingSequence=m_tupleIndexes[index].getIndexingSequence();
int boundPrefixSize=0;
for (int position=0;positionboundPrefixSizeInSelected) {
selectedTupleIndex=m_tupleIndexes[index];
boundPrefixSizeInSelected=boundPrefixSize;
}
}
if (selectedTupleIndex==null)
return new UnindexedRetrieval(bindingPositions,bindingsBuffer,tupleBuffer,ownsBuffers,extensionView);
else
return new IndexedRetrieval(selectedTupleIndex,bindingPositions,bindingsBuffer,tupleBuffer,ownsBuffers,extensionView);
}
protected void removeTuple(int tupleIndex) {
m_tupleTable.retrieveTuple(m_auxiliaryTuple,tupleIndex);
for (int index=m_tupleIndexes.length-1;index>=0;--index)
m_tupleIndexes[index].removeTuple(m_auxiliaryTuple);
postRemove(m_auxiliaryTuple,tupleIndex);
}
public void clear() {
super.clear();
for (int index=m_tupleIndexes.length-1;index>=0;--index)
m_tupleIndexes[index].clear();
}
protected class IndexedRetrieval extends TupleIndex.TupleIndexRetrieval implements Retrieval,Serializable {
private static final long serialVersionUID=2180748099314801734L;
protected final int[] m_bindingPositions;
protected final Object[] m_tupleBuffer;
protected final boolean m_ownsBuffers;
protected final ExtensionTable.View m_extensionView;
protected final boolean m_checkTupleSelection;
protected DependencySet m_dependencySet;
protected boolean m_isCore;
protected int m_firstTupleIndex;
protected int m_afterLastTupleIndex;
public IndexedRetrieval(TupleIndex tupleIndex,int[] bindingPositions,Object[] bindingsBuffer,Object[] tupleBuffer,boolean ownsBuffers,View extensionView) {
super(tupleIndex,bindingsBuffer,createSelectionArray(bindingPositions,tupleIndex.m_indexingSequence));
m_ownsBuffers=ownsBuffers;
m_bindingPositions=bindingPositions;
m_extensionView=extensionView;
m_tupleBuffer=tupleBuffer;
int numberOfBoundPositions=0;
for (int index=m_bindingPositions.length-1;index>=0;--index)
if (m_bindingPositions[index]!=-1)
numberOfBoundPositions++;
m_checkTupleSelection=(numberOfBoundPositions>m_selectionIndices.length);
}
public ExtensionTable getExtensionTable() {
return ExtensionTableWithTupleIndexes.this;
}
public ExtensionTable.View getExtensionView() {
return m_extensionView;
}
public void clear() {
if (m_ownsBuffers) {
for (int index=m_bindingsBuffer.length-1;index>=0;--index)
m_bindingsBuffer[index]=null;
for (int index=m_tupleBuffer.length-1;index>=0;--index)
m_tupleBuffer[index]=null;
}
}
public int[] getBindingPositions() {
return m_bindingPositions;
}
public Object[] getBindingsBuffer() {
return m_bindingsBuffer;
}
public Object[] getTupleBuffer() {
return m_tupleBuffer;
}
public DependencySet getDependencySet() {
return m_dependencySet;
}
public boolean isCore() {
return m_isCore;
}
public void open() {
switch (m_extensionView) {
case EXTENSION_THIS:
m_firstTupleIndex=0;
m_afterLastTupleIndex=m_afterExtensionThisTupleIndex;
break;
case EXTENSION_OLD:
m_firstTupleIndex=0;
m_afterLastTupleIndex=m_afterExtensionOldTupleIndex;
break;
case DELTA_OLD:
m_firstTupleIndex=m_afterExtensionOldTupleIndex;
m_afterLastTupleIndex=m_afterExtensionThisTupleIndex;
break;
case TOTAL:
m_firstTupleIndex=0;
m_afterLastTupleIndex=m_afterDeltaNewTupleIndex;
break;
}
super.open();
while (!afterLast()) {
int tupleIndex=getCurrentTupleIndex();
if (m_firstTupleIndex<=tupleIndex && tupleIndex=0;--index)
if (m_bindingPositions[index]!=-1 && !m_tupleBuffer[index].equals(m_bindingsBuffer[m_bindingPositions[index]]))
return false;
return true;
}
}
protected static int[] createSelectionArray(int[] bindingPositions,int[] indexingSequence) {
int boundPrefixLength=0;
for (int index=0;index
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